1 HisKA#1
138-204 aa · 67 aa · 10.3% of protein
Raw token
HisKA:138:4.69e-18:204:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKE02_RS01730
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_009680075
ClassHKTypeHybridLength648 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009680075#GKE02_RS01730Stable P2CS identifier used across views.
GenomeGCF_009680075Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length648 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 648 aa (64.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa648 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
251-365 aa · 115 aa · 17.7% of protein
Raw token
HATPase_c:251:9.66e-32:365:115:1093 Response_reg#3
388-503 aa · 116 aa · 17.9% of protein
Raw token
Response_reg:388:0.00000000000000335:503:116:1114 Response_reg#4
528-644 aa · 117 aa · 18.1% of protein
Raw token
Response_reg:528:1.63e-33:644:117:111- Raw architecture: HisKA:138:4.69e-18:204:67:64#HATPase_c:251:9.66e-32:365:115:109#Response_reg:388:0.00000000000000335:503:116:111#Response_reg:528:1.63e-33:644:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009680075::NZ_WKQK01000002.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span26880-29459Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKE02_01730RefSeq proteinWP_423244770.1
Context group ID
GCF_009680075::NZ_WKQK01000002.1::G00017Context members
GKE02_RS01730
Partner locus tags
GKE02_RS01730
Partner old locus tags
GKE02_01730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_423244770.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKE02_RS01730Primary locus identifier stored in the genes table.
Old locus tagGKE02_01730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQK01000002.1Sequence record reported by the local genomic context database.
Genomic interval26 880-29 459 nt2 580 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 880-29 459 ntGCF_009680075::NZ_WKQK01000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009680075::NZ_WKQK01000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span26 880-29 459 nt2 580 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 880 nt29 459 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GKE02_RS01730GCF_009680075#GKE02_RS01730
HKHybridCurrent focus
26 880-29 459 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004167405#EAI90_RS01730Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0901516
Simplified PFAM architecture for HKOC_0901516
PFAM domain coverage: 412 / 648 aa (63.6%)
1 aa648 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[138-204] | HATPase_c[252-365] | Response_reg[388-502] | Response_reg[528-643]
- Domain count: 4
- Matched identifier: HKOC_0901516
- Positioned domains: HisKA 138-204 ; HATPase_c 252-365 ; Response_reg 388-502 ; Response_reg 528-643
Cluster members and taxonomy
Representative gene: GCF_004167405#EAI90_RS01730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009680075
AssemblyASM968007v1 · Contighaploid
Genome composition3 097 750 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 57 · HK 26 · RR 29CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key