1 Response_reg#1
5-117 aa · 113 aa · 41.7% of protein
Raw token
Response_reg:5:1.51e-24:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKE00_RS00465
Response regulator, unclassified
Faecalibacterium prausnitzii · GCF_009679965
ClassRRTypeunclassifiedLength271 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679965#GKE00_RS00465Stable P2CS identifier used across views.
GenomeGCF_009679965Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length271 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 271 aa (66.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa271 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
169-203 aa · 35 aa · 12.9% of protein
Raw token
HTH_AraC:169:0.00000336:203:35:423 HTH_AraC#3
229-260 aa · 32 aa · 11.8% of protein
Raw token
HTH_AraC:229:0.0000000000493:260:32:42- Raw architecture: Response_reg:5:1.51e-24:117:114:111#HTH_AraC:169:0.00000336:203:35:42#HTH_AraC:229:0.0000000000493:260:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679965::NZ_WKQF01000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114720-117061Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKE00_00465RefSeq proteinWP_112090320.1
Context group ID
GCF_009679965::NZ_WKQF01000001.1::G00010Context members
GKE00_RS00465GKE00_RS00470
Partner locus tags
GKE00_RS00465GKE00_RS00470
Partner old locus tags
GKE00_00465GKE00_00470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112090320.1Primary protein accession used for annex mappings.
UniProt accessionA0A329UFJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A329UFJ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKE00_RS00465Primary locus identifier stored in the genes table.
Old locus tagGKE00_00465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQF01000001.1Sequence record reported by the local genomic context database.
Genomic interval114 720-115 535 nt816 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span114 720-117 061 ntGCF_009679965::NZ_WKQF01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679965::NZ_WKQF01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span114 720-117 061 nt2 342 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 720 nt117 061 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKE00_RS00465GCF_009679965#GKE00_RS00465
RRunclassifiedCurrent focus
114 720-115 535 nt · Reverse (-)
GKE00_RS00470GCF_009679965#GKE00_RS00470
HKClassic
115 532-117 061 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS03405Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0612493
Simplified PFAM architecture for RROC_0612493
PFAM domain coverage: 190 / 271 aa (70.1%)
1 aa271 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[183-260]
- Domain count: 2
- Matched identifier: RROC_0612493
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 183-260 ; HTH_18 183-260
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS03405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679965
AssemblyASM967996v1 · Scaffoldhaploid
Genome composition3 421 522 bp · 55,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 65 · HK 30 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key