1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.0000156:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD84_RS11690
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_009679905
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679905#GKD84_RS11690Stable P2CS identifier used across views.
GenomeGCF_009679905Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 305 aa (72.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000555:150:66:643 HATPase_c#3
202-304 aa · 103 aa · 33.8% of protein
Raw token
HATPase_c:202:5.37e-30:304:103:109- Raw architecture: HAMP:4:0.0000156:56:53:69#HisKA:85:0.0000000555:150:66:64#HATPase_c:202:5.37e-30:304:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679905::NZ_WKQC01000016.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76219-77834Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD84_11690RefSeq proteinWP_154252321.1
Context group ID
GCF_009679905::NZ_WKQC01000016.1::G00012Context members
GKD84_RS11690GKD84_RS11695
Partner locus tags
GKD84_RS11690GKD84_RS11695
Partner old locus tags
GKD84_11690GKD84_11695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154252321.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KIJ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KIJ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD84_RS11690Primary locus identifier stored in the genes table.
Old locus tagGKD84_11690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQC01000016.1Sequence record reported by the local genomic context database.
Genomic interval76 219-77 136 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 219-77 834 ntGCF_009679905::NZ_WKQC01000016.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679905::NZ_WKQC01000016.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQC01000016.1All displayed genes belong to this local TCS context.
Neighborhood span76 219-77 834 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 219 nt77 834 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD84_RS11690GCF_009679905#GKD84_RS11690
HKClassicCurrent focus
76 219-77 136 nt · Reverse (-)
GKD84_RS11695GCF_009679905#GKD84_RS11695
RROmpR
77 142-77 834 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS11265Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882444
Simplified PFAM architecture for HKOC_2882444
PFAM domain coverage: 170 / 305 aa (55.7%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[199-304]
- Domain count: 2
- Matched identifier: HKOC_2882444
- Positioned domains: HisKA 85-148 ; HATPase_c 199-304
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS11265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679905
AssemblyASM967990v1 · Contighaploid
Genome composition3 184 549 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 63 · HK 30 · RR 31CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key