1 Response_reg#1
17-126 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:17:1.18e-32:126:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD84_RS08190
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_009679905
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679905#GKD84_RS08190Stable P2CS identifier used across views.
GenomeGCF_009679905Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 236 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-232 aa · 73 aa · 30.9% of protein
Raw token
Trans_reg_C:160:1.24e-25:232:75:77- Raw architecture: Response_reg:17:1.18e-32:126:110:111#Trans_reg_C:160:1.24e-25:232:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679905::NZ_WKQC01000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2159-3912Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD84_08185RefSeq proteinWP_097782385.1
Context group ID
GCF_009679905::NZ_WKQC01000010.1::G00001Context members
GKD84_RS08185GKD84_RS08190
Partner locus tags
GKD84_RS08185GKD84_RS08190
Partner old locus tags
GKD84_08180GKD84_08185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097782385.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7A4B0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7A4B0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD84_RS08190Primary locus identifier stored in the genes table.
Old locus tagGKD84_08185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQC01000010.1Sequence record reported by the local genomic context database.
Genomic interval3 202-3 912 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 159-3 912 ntGCF_009679905::NZ_WKQC01000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679905::NZ_WKQC01000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQC01000010.1All displayed genes belong to this local TCS context.
Neighborhood span2 159-3 912 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 159 nt3 912 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD84_RS08185GCF_009679905#GKD84_RS08185
HKClassic
2 159-3 202 nt · Reverse (-)
GKD84_RS08190GCF_009679905#GKD84_RS08190
RROmpRCurrent focus
3 202-3 912 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549935#CGS55_RS00865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0994049
Simplified PFAM architecture for RROC_0994049
PFAM domain coverage: 182 / 236 aa (77.1%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[17-125] | Trans_reg_C[160-232]
- Domain count: 2
- Matched identifier: RROC_0994049
- Positioned domains: Response_reg 17-125 ; Response_reg 17-125 ; Trans_reg_C 160-232 ; Trans_reg_C 160-232
Cluster members and taxonomy
Representative gene: GCF_002549935#CGS55_RS00865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679905
AssemblyASM967990v1 · Contighaploid
Genome composition3 184 549 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 63 · HK 30 · RR 31CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key