1 Response_reg#1
4-114 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:4:0.0000000000000285:114:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD84_RS04490
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_009679905
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009679905#GKD84_RS04490Stable P2CS identifier used across views.
GenomeGCF_009679905Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 239 aa (85.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
133-226 aa · 94 aa · 39.3% of protein
Raw token
LytTR:133:2.32e-16:226:99:98- Raw architecture: Response_reg:4:0.0000000000000285:114:116:111#LytTR:133:2.32e-16:226:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009679905::NZ_WKQC01000004.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13856-14575Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD84_04490RefSeq proteinWP_154244564.1
Context group ID
GCF_009679905::NZ_WKQC01000004.1::G00030Context members
GKD84_RS04490
Partner locus tags
GKD84_RS04490
Partner old locus tags
GKD84_04490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154244564.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KE23Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KE23_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD84_RS04490Primary locus identifier stored in the genes table.
Old locus tagGKD84_04490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQC01000004.1Sequence record reported by the local genomic context database.
Genomic interval13 856-14 575 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 856-14 575 ntGCF_009679905::NZ_WKQC01000004.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679905::NZ_WKQC01000004.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQC01000004.1All displayed genes belong to this local TCS context.
Neighborhood span13 856-14 575 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 856 nt14 575 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GKD84_RS04490GCF_009679905#GKD84_RS04490
RRLytTRCurrent focus
13 856-14 575 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679335#GKD16_RS14390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0915324
Simplified PFAM architecture for RROC_0915324
PFAM domain coverage: 200 / 239 aa (83.7%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-111] | LytTR[135-226]
- Domain count: 2
- Matched identifier: RROC_0915324
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; LytTR 135-226 ; LytTR 135-226
Cluster members and taxonomy
Representative gene: GCF_009679335#GKD16_RS14390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679905
AssemblyASM967990v1 · Contighaploid
Genome composition3 184 549 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 63 · HK 30 · RR 31CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key