1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:2.12e-41:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD84_RS02190
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_009679905
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679905#GKD84_RS02190Stable P2CS identifier used across views.
GenomeGCF_009679905Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 225 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-218 aa · 73 aa · 32.4% of protein
Raw token
Trans_reg_C:146:2.83e-22:218:75:77- Raw architecture: Response_reg:4:2.12e-41:113:110:111#Trans_reg_C:146:2.83e-22:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679905::NZ_WKQC01000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36760-38582Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD84_02190RefSeq proteinWP_154252067.1
Context group ID
GCF_009679905::NZ_WKQC01000002.1::G00023Context members
GKD84_RS02190GKD84_RS02195
Partner locus tags
GKD84_RS02190GKD84_RS02195
Partner old locus tags
GKD84_02190GKD84_02195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154252067.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KLS9Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KLS9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD84_RS02190Primary locus identifier stored in the genes table.
Old locus tagGKD84_02190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQC01000002.1Sequence record reported by the local genomic context database.
Genomic interval36 760-37 437 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 760-38 582 ntGCF_009679905::NZ_WKQC01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679905::NZ_WKQC01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQC01000002.1All displayed genes belong to this local TCS context.
Neighborhood span36 760-38 582 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 760 nt38 582 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD84_RS02190GCF_009679905#GKD84_RS02190
RROmpRCurrent focus
36 760-37 437 nt · Forward (+)
GKD84_RS02195GCF_009679905#GKD84_RS02195
HKClassic
37 434-38 582 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS04900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1485899
Simplified PFAM architecture for RROC_1485899
PFAM domain coverage: 183 / 225 aa (81.3%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[146-218]
- Domain count: 2
- Matched identifier: RROC_1485899
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 146-218 ; Trans_reg_C 146-218
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS04900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679905
AssemblyASM967990v1 · Contighaploid
Genome composition3 184 549 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 63 · HK 30 · RR 31CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key