1 Response_reg#1
6-115 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:6:2.58e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD84_RS01885
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_009679905
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679905#GKD84_RS01885Stable P2CS identifier used across views.
GenomeGCF_009679905Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 236 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 32.2% of protein
Raw token
Trans_reg_C:153:4.22e-26:228:76:77- Raw architecture: Response_reg:6:2.58e-36:115:111:111#Trans_reg_C:153:4.22e-26:228:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679905::NZ_WKQC01000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span398693-401174Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD84_01885RefSeq proteinWP_097779998.1
Context group ID
GCF_009679905::NZ_WKQC01000001.1::G00015Context members
GKD84_RS01885GKD84_RS01890
Partner locus tags
GKD84_RS01885GKD84_RS01890
Partner old locus tags
GKD84_01885GKD84_01890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097779998.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1C4X1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1C4X1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD84_RS01885Primary locus identifier stored in the genes table.
Old locus tagGKD84_01885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQC01000001.1Sequence record reported by the local genomic context database.
Genomic interval398 693-399 403 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span398 693-401 174 ntGCF_009679905::NZ_WKQC01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679905::NZ_WKQC01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQC01000001.1All displayed genes belong to this local TCS context.
Neighborhood span398 693-401 174 nt2 482 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
398 693 nt401 174 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD84_RS01885GCF_009679905#GKD84_RS01885
RROmpRCurrent focus
398 693-399 403 nt · Reverse (-)
GKD84_RS01890GCF_009679905#GKD84_RS01890
HKClassic
399 396-401 174 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550015#CGS59_RS11225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0994054
Simplified PFAM architecture for RROC_0994054
PFAM domain coverage: 185 / 236 aa (78.4%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_0994054
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_002550015#CGS59_RS11225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679905
AssemblyASM967990v1 · Contighaploid
Genome composition3 184 549 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 63 · HK 30 · RR 31CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key