1 HAMP#1
50-120 aa · 71 aa · 20.5% of protein
Raw token
HAMP:50:0.00000000000705:120:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD92_RS08475
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_009679895
ClassHKTypeClassicLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679895#GKD92_RS08475Stable P2CS identifier used across views.
GenomeGCF_009679895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 347 aa (70.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation3 items
2 HisKA#2
127-189 aa · 63 aa · 18.2% of protein
Raw token
HisKA:127:2.83e-16:189:63:643 HATPase_c#3
233-343 aa · 111 aa · 32.0% of protein
Raw token
HATPase_c:233:3.37e-28:343:111:109- Raw architecture: HAMP:50:0.00000000000705:120:71:69#HisKA:127:2.83e-16:189:63:64#HATPase_c:233:3.37e-28:343:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679895::NZ_WKQD01000012.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2159-3912Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD92_08480RefSeq proteinWP_005929825.1
Context group ID
GCF_009679895::NZ_WKQD01000012.1::G00001Context members
GKD92_RS08475GKD92_RS08480
Partner locus tags
GKD92_RS08475GKD92_RS08480
Partner old locus tags
GKD92_08480GKD92_08485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005929825.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BPM0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BPM0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD92_RS08475Primary locus identifier stored in the genes table.
Old locus tagGKD92_08480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQD01000012.1Sequence record reported by the local genomic context database.
Genomic interval2 159-3 202 nt1 044 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 159-3 912 ntGCF_009679895::NZ_WKQD01000012.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679895::NZ_WKQD01000012.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQD01000012.1All displayed genes belong to this local TCS context.
Neighborhood span2 159-3 912 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 159 nt3 912 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD92_RS08475GCF_009679895#GKD92_RS08475
HKClassicCurrent focus
2 159-3 202 nt · Reverse (-)
GKD92_RS08480GCF_009679895#GKD92_RS08480
RROmpR
3 202-3 912 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS02180Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2810205
Simplified PFAM architecture for HKOC_2810205
PFAM domain coverage: 220 / 347 aa (63.4%)
1 aa347 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[70-120] | HisKA[126-188] | HATPase_c[237-342]
- Domain count: 3
- Matched identifier: HKOC_2810205
- Positioned domains: HAMP 70-120 ; HisKA 126-188 ; HATPase_c 237-342
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS02180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679895
AssemblyASM967989v1 · Scaffoldhaploid
Genome composition3 289 671 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key