1 HAMP#1
295-365 aa · 71 aa · 11.7% of protein
Raw token
HAMP:295:0.0000000148:365:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD92_RS04040
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_009679895
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679895#GKD92_RS04040Stable P2CS identifier used across views.
GenomeGCF_009679895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 605 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-461 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:382:2.54e-29:461:80:803 HATPase_c#3
484-593 aa · 110 aa · 18.2% of protein
Raw token
HATPase_c:484:0.00000000000000277:593:110:109- Raw architecture: HAMP:295:0.0000000148:365:72:69#His_kinase:382:2.54e-29:461:80:80#HATPase_c:484:0.00000000000000277:593:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679895::NZ_WKQD01000004.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8572-11626Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD92_04045RefSeq proteinWP_154251816.1
Context group ID
GCF_009679895::NZ_WKQD01000004.1::G00032Context members
GKD92_RS04035GKD92_RS04040
Partner locus tags
GKD92_RS04035GKD92_RS04040
Partner old locus tags
GKD92_04040GKD92_04045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154251816.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KDS5Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KDS5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD92_RS04040Primary locus identifier stored in the genes table.
Old locus tagGKD92_04045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQD01000004.1Sequence record reported by the local genomic context database.
Genomic interval9 809-11 626 nt1 818 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 572-11 626 ntGCF_009679895::NZ_WKQD01000004.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679895::NZ_WKQD01000004.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span8 572-11 626 nt3 055 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 572 nt11 626 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD92_RS04035GCF_009679895#GKD92_RS04035
RRunclassified
8 572-9 834 nt · Reverse (-)
GKD92_RS04040GCF_009679895#GKD92_RS04040
HKClassicCurrent focus
9 809-11 626 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS03250Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1029790
Simplified PFAM architecture for HKOC_1029790
PFAM domain coverage: 237 / 605 aa (39.2%)
1 aa605 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[316-365] | His_kinase[383-460] | HATPase_c[484-592]
- Domain count: 3
- Matched identifier: HKOC_1029790
- Positioned domains: HAMP 316-365 ; His_kinase 383-460 ; HATPase_c 484-592
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS03250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679895
AssemblyASM967989v1 · Scaffoldhaploid
Genome composition3 289 671 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key