1 Response_reg#1
5-110 aa · 106 aa · 44.2% of protein
Raw token
Response_reg:5:0.00000000000000344:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD92_RS03225
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_009679895
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009679895#GKD92_RS03225Stable P2CS identifier used across views.
GenomeGCF_009679895Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 240 aa (76.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-215 aa · 78 aa · 32.5% of protein
Raw token
LytTR:138:0.00000000000449:215:83:98- Raw architecture: Response_reg:5:0.00000000000000344:110:108:111#LytTR:138:0.00000000000449:215:83:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009679895::NZ_WKQD01000003.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7489-8211Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD92_03230RefSeq proteinWP_154251737.1
Context group ID
GCF_009679895::NZ_WKQD01000003.1::G00025Context members
GKD92_RS03225
Partner locus tags
GKD92_RS03225
Partner old locus tags
GKD92_03230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154251737.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KP46Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KP46_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD92_RS03225Primary locus identifier stored in the genes table.
Old locus tagGKD92_03230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQD01000003.1Sequence record reported by the local genomic context database.
Genomic interval7 489-8 211 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 489-8 211 ntGCF_009679895::NZ_WKQD01000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679895::NZ_WKQD01000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span7 489-8 211 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 489 nt8 211 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GKD92_RS03225GCF_009679895#GKD92_RS03225
RRLytTRCurrent focus
7 489-8 211 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS05050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0890426
Simplified PFAM architecture for RROC_0890426
PFAM domain coverage: 173 / 240 aa (72.1%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-112] | LytTR[137-201]
- Domain count: 2
- Matched identifier: RROC_0890426
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; LytTR 137-201 ; LytTR 137-201
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS05050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679895
AssemblyASM967989v1 · Scaffoldhaploid
Genome composition3 289 671 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key