1 Response_reg#1
3-112 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:3:4.04e-28:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD87_RS06140
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_009679865
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679865#GKD87_RS06140Stable P2CS identifier used across views.
GenomeGCF_009679865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 220 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:145:3.05e-23:219:76:77- Raw architecture: Response_reg:3:4.04e-28:112:111:111#Trans_reg_C:145:3.05e-23:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679865::NZ_WKQB01000006.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22357-24032Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD87_06140RefSeq proteinWP_154251889.1
Context group ID
GCF_009679865::NZ_WKQB01000006.1::G00037Context members
GKD87_RS06140GKD87_RS06145
Partner locus tags
GKD87_RS06140GKD87_RS06145
Partner old locus tags
GKD87_06140GKD87_06145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154251889.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KN29Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KN29_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD87_RS06140Primary locus identifier stored in the genes table.
Old locus tagGKD87_06140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQB01000006.1Sequence record reported by the local genomic context database.
Genomic interval22 357-23 019 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 357-24 032 ntGCF_009679865::NZ_WKQB01000006.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679865::NZ_WKQB01000006.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQB01000006.1All displayed genes belong to this local TCS context.
Neighborhood span22 357-24 032 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 357 nt24 032 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD87_RS06140GCF_009679865#GKD87_RS06140
RROmpRCurrent focus
22 357-23 019 nt · Forward (+)
GKD87_RS06145GCF_009679865#GKD87_RS06145
HKClassic
23 016-24 032 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS06750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1735956
Simplified PFAM architecture for RROC_1735956
PFAM domain coverage: 184 / 220 aa (83.6%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1735956
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS06750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679865
AssemblyASM967986v1 · Scaffoldhaploid
Genome composition3 190 795 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 65 · HK 30 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key