1 HisKA_3#1
210-271 aa · 62 aa · 14.5% of protein
Raw token
HisKA_3:210:0.00000000000101:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GFJ40_RS05615
Histidine kinase, Classic
Bifidobacterium breve · GCF_009498435
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009498435#GFJ40_RS05615Stable P2CS identifier used across views.
GenomeGCF_009498435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 429 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-414 aa · 85 aa · 19.8% of protein
Raw token
HATPase_c:330:0.000000000412:414:98:109- Raw architecture: HisKA_3:210:0.00000000000101:271:65:68#HATPase_c:330:0.000000000412:414:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009498435::NZ_CP045646.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1299932-1301897Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGFJ40_05855RefSeq proteinWP_095256890.1
Context group ID
GCF_009498435::NZ_CP045646.1::G00009Context members
GFJ40_RS05615GFJ40_RS05620
Partner locus tags
GFJ40_RS05615GFJ40_RS05620
Partner old locus tags
GFJ40_05855GFJ40_05860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095256890.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGFJ40_RS05615Primary locus identifier stored in the genes table.
Old locus tagGFJ40_05855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP045646.1Sequence record reported by the local genomic context database.
Genomic interval1 299 932-1 301 221 nt1 290 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 299 932-1 301 897 ntGCF_009498435::NZ_CP045646.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009498435::NZ_CP045646.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP045646.1All displayed genes belong to this local TCS context.
Neighborhood span1 299 932-1 301 897 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 299 932 nt1 301 897 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GFJ40_RS05615GCF_009498435#GFJ40_RS05615
HKClassicCurrent focus
1 299 932-1 301 221 nt · Forward (+)
GFJ40_RS05620GCF_009498435#GFJ40_RS05620
RRNarL
1 301 214-1 301 897 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002271275#BBR7E_RS05195Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2181612
Simplified PFAM architecture for HKOC_2181612
PFAM domain coverage: 155 / 429 aa (36.1%)
1 aa429 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-416]
- Domain count: 2
- Matched identifier: HKOC_2181612
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-416
Cluster members and taxonomy
Representative gene: GCF_002271275#BBR7E_RS05195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_009498435
AssemblyASM949843v1 · Complete Genomehaploid
Genome composition2 274 146 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 25 · HK 10 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key