1 HisKA_3#1
212-275 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:212:0.00000000000000203:275:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GFJ40_RS04410
Histidine kinase, Classic
Bifidobacterium breve · GCF_009498435
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009498435#GFJ40_RS04410Stable P2CS identifier used across views.
GenomeGCF_009498435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 448 aa (40.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-440 aa · 119 aa · 26.6% of protein
Raw token
HATPase_c:322:0.000000000425:440:120:109- Raw architecture: HisKA_3:212:0.00000000000000203:275:64:68#HATPase_c:322:0.000000000425:440:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009498435::NZ_CP045646.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1051951-1053947Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGFJ40_04585RefSeq proteinWP_042994110.1
Context group ID
GCF_009498435::NZ_CP045646.1::G00007Context members
GFJ40_RS04405GFJ40_RS04410
Partner locus tags
GFJ40_RS04405GFJ40_RS04410
Partner old locus tags
GFJ40_04580GFJ40_04585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_042994110.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGFJ40_RS04410Primary locus identifier stored in the genes table.
Old locus tagGFJ40_04585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP045646.1Sequence record reported by the local genomic context database.
Genomic interval1 052 601-1 053 947 nt1 347 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 051 951-1 053 947 ntGCF_009498435::NZ_CP045646.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009498435::NZ_CP045646.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP045646.1All displayed genes belong to this local TCS context.
Neighborhood span1 051 951-1 053 947 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 051 951 nt1 053 947 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GFJ40_RS04405GCF_009498435#GFJ40_RS04405
RRNarL
1 051 951-1 052 604 nt · Reverse (-)
GFJ40_RS04410GCF_009498435#GFJ40_RS04410
HKClassicCurrent focus
1 052 601-1 053 947 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002271275#BBR7E_RS07325Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1989923
Simplified PFAM architecture for HKOC_1989923
PFAM domain coverage: 185 / 448 aa (41.3%)
1 aa448 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[212-277] | HATPase_c[320-438]
- Domain count: 2
- Matched identifier: HKOC_1989923
- Positioned domains: HisKA_3 212-277 ; HATPase_c 320-438
Cluster members and taxonomy
Representative gene: GCF_002271275#BBR7E_RS07325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_009498435
AssemblyASM949843v1 · Complete Genomehaploid
Genome composition2 274 146 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 25 · HK 10 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key