1 Response_reg#1
9-127 aa · 119 aa · 44.4% of protein
Raw token
Response_reg:9:8.69e-30:127:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GFJ40_RS04160
Response regulator NarL family
Bifidobacterium breve · GCF_009498435
ClassRRTypeNarLLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009498435#GFJ40_RS04160Stable P2CS identifier used across views.
GenomeGCF_009498435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 268 aa (66.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
205-262 aa · 58 aa · 21.6% of protein
Raw token
HTH_LUXR:205:2.36e-24:262:58:58- Raw architecture: Response_reg:9:8.69e-30:127:119:111#HTH_LUXR:205:2.36e-24:262:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009498435::NZ_CP045646.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span997882-1001178Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGFJ40_04320RefSeq proteinWP_015438699.1
Context group ID
GCF_009498435::NZ_CP045646.1::G00006Context members
GFJ40_RS04160GFJ40_RS04165
Partner locus tags
GFJ40_RS04160GFJ40_RS04165
Partner old locus tags
GFJ40_04320GFJ40_04325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015438699.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGFJ40_RS04160Primary locus identifier stored in the genes table.
Old locus tagGFJ40_04320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP045646.1Sequence record reported by the local genomic context database.
Genomic interval997 882-998 688 nt807 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span997 882-1 001 178 ntGCF_009498435::NZ_CP045646.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009498435::NZ_CP045646.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP045646.1All displayed genes belong to this local TCS context.
Neighborhood span997 882-1 001 178 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
997 882 nt1 001 178 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GFJ40_RS04160GCF_009498435#GFJ40_RS04160
RRNarLCurrent focus
997 882-998 688 nt · Reverse (-)
GFJ40_RS04165GCF_009498435#GFJ40_RS04165
HKClassic
998 710-1 001 178 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000220135#BBR_RS14610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0619476
Simplified PFAM architecture for RROC_0619476
PFAM domain coverage: 174 / 268 aa (64.9%)
1 aa268 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-126] | GerE[207-262]
- Domain count: 2
- Matched identifier: RROC_0619476
- Positioned domains: Response_reg 9-126 ; Response_reg 9-126 ; GerE 207-262 ; GerE 207-262
Cluster members and taxonomy
Representative gene: GCF_000220135#BBR_RS14610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_009498435
AssemblyASM949843v1 · Complete Genomehaploid
Genome composition2 274 146 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 25 · HK 10 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key