1 HAMP#1
252-320 aa · 69 aa · 10.8% of protein
Raw token
HAMP:252:8.69e-16:320:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GEO35_RS03275
Histidine kinase, Classic
Bifidobacterium breve · GCF_009429085
ClassHKTypeClassicLength641 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009429085#GEO35_RS03275Stable P2CS identifier used across views.
GenomeGCF_009429085Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length641 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 641 aa (44.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa641 aa
Domain-by-domain annotation3 items
2 HisKA#2
332-401 aa · 70 aa · 10.9% of protein
Raw token
HisKA:332:7.25e-18:401:70:643 HATPase_c#3
465-612 aa · 148 aa · 23.1% of protein
Raw token
HATPase_c:465:5.6e-21:612:148:109- Raw architecture: HAMP:252:8.69e-16:320:69:69#HisKA:332:7.25e-18:401:70:64#HATPase_c:465:5.6e-21:612:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009429085::NZ_CP045532.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span730645-733378Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGEO35_03380RefSeq proteinWP_014483538.1
Context group ID
GCF_009429085::NZ_CP045532.1::G00007Context members
GEO35_RS03275GEO35_RS03280
Partner locus tags
GEO35_RS03275GEO35_RS03280
Partner old locus tags
GEO35_03380GEO35_03385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_014483538.1Primary protein accession used for annex mappings.
UniProt accessionA0A2K9B346Primary UniProt accession resolved in the annex database.
UniProt IDA0A2K9B346_BIFBRDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGEO35_RS03275Primary locus identifier stored in the genes table.
Old locus tagGEO35_03380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP045532.1Sequence record reported by the local genomic context database.
Genomic interval730 645-732 570 nt1 926 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span730 645-733 378 ntGCF_009429085::NZ_CP045532.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009429085::NZ_CP045532.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP045532.1All displayed genes belong to this local TCS context.
Neighborhood span730 645-733 378 nt2 734 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
730 645 nt733 378 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GEO35_RS03275GCF_009429085#GEO35_RS03275
HKClassicCurrent focus
730 645-732 570 nt · Reverse (-)
GEO35_RS03280GCF_009429085#GEO35_RS03280
RROmpR
732 647-733 378 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000213865#HMPREF9228_RS02465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0918279
Simplified PFAM architecture for HKOC_0918279
PFAM domain coverage: 268 / 641 aa (41.8%)
1 aa641 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[269-320] | HisKA[333-401] | HATPase_c[465-611]
- Domain count: 3
- Matched identifier: HKOC_0918279
- Positioned domains: HAMP 269-320 ; HisKA 333-401 ; HATPase_c 465-611
Cluster members and taxonomy
Representative gene: GCF_000213865#HMPREF9228_RS02465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_009429085
AssemblyASM942908v1 · Chromosomehaploid
Genome composition2 452 339 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 24 · HK 9 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key