1 Response_reg#1
8-109 aa · 102 aa · 42.9% of protein
Raw token
Response_reg:8:1.24e-19:109:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBB04_RS10655
Response regulator LytTR family
Bifidobacterium dentium · GCF_009160735
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009160735#GBB04_RS10655Stable P2CS identifier used across views.
GenomeGCF_009160735Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 238 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:5.44e-19:230:97:98- Raw architecture: Response_reg:8:1.24e-19:109:107:111#LytTR:139:5.44e-19:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009160735::NZ_WDPD01000017.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span25083-25799Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBB04_10655RefSeq proteinWP_129880204.1
Context group ID
GCF_009160735::NZ_WDPD01000017.1::G00008Context members
GBB04_RS10655
Partner locus tags
GBB04_RS10655
Partner old locus tags
GBB04_10655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_129880204.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2TX11Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2TX11_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBB04_RS10655Primary locus identifier stored in the genes table.
Old locus tagGBB04_10655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDPD01000017.1Sequence record reported by the local genomic context database.
Genomic interval25 083-25 799 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 083-25 799 ntGCF_009160735::NZ_WDPD01000017.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009160735::NZ_WDPD01000017.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDPD01000017.1All displayed genes belong to this local TCS context.
Neighborhood span25 083-25 799 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 083 nt25 799 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GBB04_RS10655GCF_009160735#GBB04_RS10655
RRLytTRCurrent focus
25 083-25 799 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004167735#EAI74_RS10770Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0941404
Simplified PFAM architecture for RROC_0941404
PFAM domain coverage: 191 / 238 aa (80.3%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[8-109] | LytTR[142-230]
- Domain count: 2
- Matched identifier: RROC_0941404
- Positioned domains: Response_reg 8-109 ; Response_reg 8-109 ; LytTR 142-230 ; LytTR 142-230
Cluster members and taxonomy
Representative gene: GCF_004167735#EAI74_RS10770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 689 · GCF_009160735
AssemblyASM916073v1 · Scaffoldhaploid
Genome composition2 868 671 bp · 58,0% GCBifidobacterium dentium
Signal transduction countsGenes 37 · HK 15 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key