1 His_kinase#1
202-290 aa · 89 aa · 21.3% of protein
Raw token
His_kinase:202:3.49e-24:290:90:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBB04_RS10030
Histidine kinase, Classic
Bifidobacterium dentium · GCF_009160735
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009160735#GBB04_RS10030Stable P2CS identifier used across views.
GenomeGCF_009160735Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 418 aa (47.8%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-418 aa · 111 aa · 26.6% of protein
Raw token
HATPase_c:308:4.43e-16:418:111:109- Raw architecture: His_kinase:202:3.49e-24:290:90:80#HATPase_c:308:4.43e-16:418:111:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009160735::NZ_WDPD01000015.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span7208-8464Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBB04_10030RefSeq proteinWP_231495387.1
Context group ID
GCF_009160735::NZ_WDPD01000015.1::G00006Context members
GBB04_RS10030
Partner locus tags
GBB04_RS10030
Partner old locus tags
GBB04_10030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_231495387.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2TZ08Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2TZ08_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBB04_RS10030Primary locus identifier stored in the genes table.
Old locus tagGBB04_10030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDPD01000015.1Sequence record reported by the local genomic context database.
Genomic interval7 208-8 464 nt1 257 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 208-8 464 ntGCF_009160735::NZ_WDPD01000015.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009160735::NZ_WDPD01000015.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDPD01000015.1All displayed genes belong to this local TCS context.
Neighborhood span7 208-8 464 nt1 257 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 208 nt8 464 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GBB04_RS10030GCF_009160735#GBB04_RS10030
HKClassicCurrent focus
7 208-8 464 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513015#HMPREF1494_RS08740Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2285400
Simplified PFAM architecture for HKOC_2285400
PFAM domain coverage: 191 / 418 aa (45.7%)
1 aa418 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[211-290] | HATPase_c[306-416]
- Domain count: 2
- Matched identifier: HKOC_2285400
- Positioned domains: His_kinase 211-290 ; HATPase_c 306-416
Cluster members and taxonomy
Representative gene: GCF_000513015#HMPREF1494_RS08740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 689 · GCF_009160735
AssemblyASM916073v1 · Scaffoldhaploid
Genome composition2 868 671 bp · 58,0% GCBifidobacterium dentium
Signal transduction countsGenes 37 · HK 15 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key