1 H_kinase_N#1
10-145 aa · 136 aa · 27.5% of protein
Raw token
H_kinase_N:10:2.16e-48:145:137:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBB04_RS08515
Histidine kinase, Classic
Bifidobacterium dentium · GCF_009160735
ClassHKTypeClassicLength494 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009160735#GBB04_RS08515Stable P2CS identifier used across views.
GenomeGCF_009160735Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length494 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 494 aa (84.0%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa494 aa
Domain-by-domain annotation4 items
2 PAS_4#2
173-278 aa · 106 aa · 21.5% of protein
Raw token
PAS_4:173:0.00000000794:278:111:1103 HisKA_2#3
292-361 aa · 70 aa · 14.2% of protein
Raw token
HisKA_2:292:4.57e-30:361:71:764 HATPase_c#4
388-490 aa · 103 aa · 20.9% of protein
Raw token
HATPase_c:388:4.92e-17:490:112:109- Raw architecture: H_kinase_N:10:2.16e-48:145:137:139#PAS_4:173:0.00000000794:278:111:110#HisKA_2:292:4.57e-30:361:71:76#HATPase_c:388:4.92e-17:490:112:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009160735::NZ_WDPD01000010.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span23151-24635Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBB04_08515RefSeq proteinWP_003843901.1
Context group ID
GCF_009160735::NZ_WDPD01000010.1::G00002Context members
GBB04_RS08515
Partner locus tags
GBB04_RS08515
Partner old locus tags
GBB04_08515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003843901.1Primary protein accession used for annex mappings.
UniProt accessionA0AB72Z464Primary UniProt accession resolved in the annex database.
UniProt IDA0AB72Z464_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBB04_RS08515Primary locus identifier stored in the genes table.
Old locus tagGBB04_08515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDPD01000010.1Sequence record reported by the local genomic context database.
Genomic interval23 151-24 635 nt1 485 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 151-24 635 ntGCF_009160735::NZ_WDPD01000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009160735::NZ_WDPD01000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDPD01000010.1All displayed genes belong to this local TCS context.
Neighborhood span23 151-24 635 nt1 485 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 151 nt24 635 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GBB04_RS08515GCF_009160735#GBB04_RS08515
HKClassicCurrent focus
23 151-24 635 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000024445#BDP_RS04255Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1509548
Simplified PFAM architecture for HKOC_1509548
PFAM domain coverage: 417 / 494 aa (84.4%)
1 aa494 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[5-141] | PAS_4[173-278] | HisKA_2[292-363] | HATPase_c[388-489]
- Domain count: 4
- Matched identifier: HKOC_1509548
- Positioned domains: GAF_PdtaS 5-141 ; PAS_4 173-278 ; HisKA_2 292-363 ; HATPase_c 388-489
Cluster members and taxonomy
Representative gene: GCF_000024445#BDP_RS04255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 689 · GCF_009160735
AssemblyASM916073v1 · Scaffoldhaploid
Genome composition2 868 671 bp · 58,0% GCBifidobacterium dentium
Signal transduction countsGenes 37 · HK 15 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key