1 Response_reg#1
4-119 aa · 116 aa · 43.8% of protein
Raw token
Response_reg:4:9.66e-20:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBB04_RS07965
Response regulator LytTR family
Bifidobacterium dentium · GCF_009160735
ClassRRTypeLytTRLength265 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009160735#GBB04_RS07965Stable P2CS identifier used across views.
GenomeGCF_009160735Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length265 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 265 aa (71.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa265 aa
Domain-by-domain annotation2 items
2 LytTR#2
170-243 aa · 74 aa · 27.9% of protein
Raw token
LytTR:170:0.0000000803:243:79:98- Raw architecture: Response_reg:4:9.66e-20:119:118:111#LytTR:170:0.0000000803:243:79:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009160735::NZ_WDPD01000008.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span25260-26057Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBB04_07965RefSeq proteinWP_003837290.1
Context group ID
GCF_009160735::NZ_WDPD01000008.1::G00019Context members
GBB04_RS07965
Partner locus tags
GBB04_RS07965
Partner old locus tags
GBB04_07965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003837290.1Primary protein accession used for annex mappings.
UniProt accessionD2Q8L8Primary UniProt accession resolved in the annex database.
UniProt IDD2Q8L8_BIFDBDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBB04_RS07965Primary locus identifier stored in the genes table.
Old locus tagGBB04_07965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDPD01000008.1Sequence record reported by the local genomic context database.
Genomic interval25 260-26 057 nt798 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 260-26 057 ntGCF_009160735::NZ_WDPD01000008.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009160735::NZ_WDPD01000008.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDPD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span25 260-26 057 nt798 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 260 nt26 057 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GBB04_RS07965GCF_009160735#GBB04_RS07965
RRLytTRCurrent focus
25 260-26 057 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000024445#BDP_RS02335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0630268
Simplified PFAM architecture for RROC_0630268
PFAM domain coverage: 196 / 265 aa (74.0%)
1 aa265 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-121] | LytTR[169-246]
- Domain count: 2
- Matched identifier: RROC_0630268
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121 ; LytTR 169-246 ; LytTR 169-246
Cluster members and taxonomy
Representative gene: GCF_000024445#BDP_RS02335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 689 · GCF_009160735
AssemblyASM916073v1 · Scaffoldhaploid
Genome composition2 868 671 bp · 58,0% GCBifidobacterium dentium
Signal transduction countsGenes 37 · HK 15 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key