1 Response_reg#1
9-146 aa · 138 aa · 86.8% of protein
Raw token
Response_reg:9:4.15e-27:146:138:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBA87_RS09525
Response regulator, CheY family
Bifidobacterium bifidum · GCF_009159495
ClassRRTypeCheYLength159 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009159495#GBA87_RS09525Stable P2CS identifier used across views.
GenomeGCF_009159495Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length159 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage138 / 159 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:4.15e-27:146:138:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009159495::NZ_WDOY01000035.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-477Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBA87_09515RefSeq proteinWP_152029391.1
Context group ID
GCF_009159495::NZ_WDOY01000035.1::G00010Context members
GBA87_RS09525
Partner locus tags
GBA87_RS09525
Partner old locus tags
GBA87_09515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_152029391.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBA87_RS09525Primary locus identifier stored in the genes table.
Old locus tagGBA87_09515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDOY01000035.1Sequence record reported by the local genomic context database.
Genomic interval1-477 nt477 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-477 ntGCF_009159495::NZ_WDOY01000035.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009159495::NZ_WDOY01000035.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDOY01000035.1All displayed genes belong to this local TCS context.
Neighborhood span1-477 nt477 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt477 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GBA87_RS09525GCF_009159495#GBA87_RS09525
RRCheYCurrent focus
1-477 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000196575#BLIF_RS03690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0580190
Simplified PFAM architecture for RROC_0580190
PFAM domain coverage: 193 / 296 aa (65.2%)
1 aa296 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-145] | GerE[235-290]
- Domain count: 2
- Matched identifier: RROC_0580190
- Positioned domains: Response_reg 9-145 ; Response_reg 9-145 ; GerE 235-290 ; GerE 235-290
Cluster members and taxonomy
Representative gene: GCF_000196575#BLIF_RS03690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_009159495
AssemblyASM915949v1 · Scaffoldhaploid
Genome composition2 327 549 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key