1 Response_reg#1
39-150 aa · 112 aa · 44.3% of protein
Raw token
Response_reg:39:1.53e-26:150:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS09950
Response regulator NarL family
Bifidobacterium reuteri · GCF_008698125
ClassRRTypeNarLLength253 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698125#EMO92_RS09950Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 253 aa (66.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
188-244 aa · 57 aa · 22.5% of protein
Raw token
HTH_LUXR:188:9.59e-16:244:58:58- Raw architecture: Response_reg:39:1.53e-26:150:112:111#HTH_LUXR:188:9.59e-16:244:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698125::NZ_RZUG01000024.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19874-21890Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_09935RefSeq proteinWP_081977824.1
Context group ID
GCF_008698125::NZ_RZUG01000024.1::G00010Context members
EMO92_RS09950EMO92_RS09955
Partner locus tags
EMO92_RS09950EMO92_RS09955
Partner old locus tags
EMO92_09935EMO92_09940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_081977824.1Primary protein accession used for annex mappings.
UniProt accessionA0A5J5E3U9Primary UniProt accession resolved in the annex database.
UniProt IDA0A5J5E3U9_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS09950Primary locus identifier stored in the genes table.
Old locus tagEMO92_09935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000024.1Sequence record reported by the local genomic context database.
Genomic interval19 874-20 584 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 874-21 890 ntGCF_008698125::NZ_RZUG01000024.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000024.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000024.1All displayed genes belong to this local TCS context.
Neighborhood span19 874-21 890 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 874 nt21 890 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO92_RS09950GCF_008698125#EMO92_RS09950
RRNarLCurrent focus
19 874-20 584 nt · Reverse (-)
EMO92_RS09955GCF_008698125#EMO92_RS09955
HKClassic
20 637-21 890 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000771685#OU25_RS02930Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0695960
Simplified PFAM architecture for RROC_0695960
PFAM domain coverage: 164 / 253 aa (64.8%)
1 aa253 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[37-149] | Sigma70_r4_2[182-232]
- Domain count: 2
- Matched identifier: RROC_0695960
- Positioned domains: Response_reg 37-149 ; Response_reg 37-149 ; Sigma70_r4_2 182-232 ; Sigma70_r4_2 182-232
Cluster members and taxonomy
Representative gene: GCF_000771685#OU25_RS02930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key