1 Response_reg#1
16-125 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:16:4.84e-26:125:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS09655
Response regulator OmpR family
Bifidobacterium reuteri · GCF_008698125
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698125#EMO92_RS09655Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 231 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-226 aa · 70 aa · 30.3% of protein
Raw token
Trans_reg_C:157:0.0000000000000189:226:77:77- Raw architecture: Response_reg:16:4.84e-26:125:111:111#Trans_reg_C:157:0.0000000000000189:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698125::NZ_RZUG01000022.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17897-19715Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_09640RefSeq proteinWP_044090375.1
Context group ID
GCF_008698125::NZ_RZUG01000022.1::G00009Context members
EMO92_RS09655EMO92_RS09660
Partner locus tags
EMO92_RS09655EMO92_RS09660
Partner old locus tags
EMO92_09640EMO92_09645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044090375.1Primary protein accession used for annex mappings.
UniProt accessionA0A5J5E3H6Primary UniProt accession resolved in the annex database.
UniProt IDA0A5J5E3H6_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS09655Primary locus identifier stored in the genes table.
Old locus tagEMO92_09640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000022.1Sequence record reported by the local genomic context database.
Genomic interval17 897-18 592 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 897-19 715 ntGCF_008698125::NZ_RZUG01000022.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000022.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000022.1All displayed genes belong to this local TCS context.
Neighborhood span17 897-19 715 nt1 819 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 897 nt19 715 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO92_RS09655GCF_008698125#EMO92_RS09655
RROmpRCurrent focus
17 897-18 592 nt · Forward (+)
EMO92_RS09660GCF_008698125#EMO92_RS09660
HKClassic
18 714-19 715 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS08310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1161385
Simplified PFAM architecture for RROC_1161385
PFAM domain coverage: 179 / 231 aa (77.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[16-124] | Trans_reg_C[157-226]
- Domain count: 2
- Matched identifier: RROC_1161385
- Positioned domains: Response_reg 16-124 ; Response_reg 16-124 ; Trans_reg_C 157-226 ; Trans_reg_C 157-226
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS08310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key