1 HAMP#1
123-192 aa · 70 aa · 14.3% of protein
Raw token
HAMP:123:0.00000000166:192:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS09465
Histidine kinase, Classic
Bifidobacterium reuteri · GCF_008698125
ClassHKTypeClassicLength489 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698125#EMO92_RS09465Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 489 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa489 aa
Domain-by-domain annotation3 items
2 HisKA#2
196-261 aa · 66 aa · 13.5% of protein
Raw token
HisKA:196:0.000000000519:261:66:643 HATPase_c#3
424-480 aa · 57 aa · 11.7% of protein
Raw token
HATPase_c:424:0.00000538:480:57:109- Raw architecture: HAMP:123:0.00000000166:192:70:69#HisKA:196:0.000000000519:261:66:64#HATPase_c:424:0.00000538:480:57:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698125::NZ_RZUG01000021.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18666-20830Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_09450RefSeq proteinWP_052404691.1
Context group ID
GCF_008698125::NZ_RZUG01000021.1::G00008Context members
EMO92_RS09465EMO92_RS09470
Partner locus tags
EMO92_RS09465EMO92_RS09470
Partner old locus tags
EMO92_09450EMO92_09455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052404691.1Primary protein accession used for annex mappings.
UniProt accessionA0A5J5E4F6Primary UniProt accession resolved in the annex database.
UniProt IDA0A5J5E4F6_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS09465Primary locus identifier stored in the genes table.
Old locus tagEMO92_09450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000021.1Sequence record reported by the local genomic context database.
Genomic interval18 666-20 135 nt1 470 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 666-20 830 ntGCF_008698125::NZ_RZUG01000021.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000021.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000021.1All displayed genes belong to this local TCS context.
Neighborhood span18 666-20 830 nt2 165 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 666 nt20 830 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO92_RS09465GCF_008698125#EMO92_RS09465
HKClassicCurrent focus
18 666-20 135 nt · Reverse (-)
EMO92_RS09470GCF_008698125#EMO92_RS09470
RROmpR
20 132-20 830 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000771685#OU25_RS11250Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1541799
Simplified PFAM architecture for HKOC_1541799
PFAM domain coverage: 233 / 489 aa (47.6%)
1 aa489 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-260] | HATPase_c[311-478]
- Domain count: 2
- Matched identifier: HKOC_1541799
- Positioned domains: HisKA 196-260 ; HATPase_c 311-478
Cluster members and taxonomy
Representative gene: GCF_000771685#OU25_RS11250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key