1 Response_reg#1
17-118 aa · 102 aa · 44.0% of protein
Raw token
Response_reg:17:7.68e-17:118:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS05725
Response regulator NarL family
Bifidobacterium reuteri · GCF_008698125
ClassRRTypeNarLLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008698125#EMO92_RS05725Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 232 aa (66.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-221 aa · 53 aa · 22.8% of protein
Raw token
HTH_LUXR:169:0.0000000000000335:221:53:58- Raw architecture: Response_reg:17:7.68e-17:118:102:111#HTH_LUXR:169:0.0000000000000335:221:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008698125::NZ_RZUG01000008.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span615-1313Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_05725RefSeq proteinWP_150335541.1
Context group ID
GCF_008698125::NZ_RZUG01000008.1::G00023Context members
EMO92_RS05725
Partner locus tags
EMO92_RS05725
Partner old locus tags
EMO92_05725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150335541.1Primary protein accession used for annex mappings.
UniProt accessionA0A5J5E7U4Primary UniProt accession resolved in the annex database.
UniProt IDA0A5J5E7U4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS05725Primary locus identifier stored in the genes table.
Old locus tagEMO92_05725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000008.1Sequence record reported by the local genomic context database.
Genomic interval615-1 313 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span615-1 313 ntGCF_008698125::NZ_RZUG01000008.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000008.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000008.1All displayed genes belong to this local TCS context.
Neighborhood span615-1 313 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
615 nt1 313 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EMO92_RS05725GCF_008698125#EMO92_RS05725
RRNarLCurrent focus
615-1 313 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698125#EMO92_RS05725The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1132471
Simplified PFAM architecture for RROC_1132471
PFAM domain coverage: 166 / 232 aa (71.6%)
1 aa232 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-129] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1132471
- Positioned domains: Response_reg 17-129 ; Response_reg 17-129 ; GerE 170-222 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_008698125#EMO92_RS05725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key