1 HisKA_3#1
215-273 aa · 59 aa · 7.1% of protein
Raw token
HisKA_3:215:1.62e-16:273:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS05130
Histidine kinase, Classic
Bifidobacterium reuteri · GCF_008698125
ClassHKTypeClassicLength827 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698125#EMO92_RS05130Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length827 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 827 aa (18.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa827 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-414 aa · 93 aa · 11.2% of protein
Raw token
HATPase_c:322:0.000000000000277:414:107:109- Raw architecture: HisKA_3:215:1.62e-16:273:59:68#HATPase_c:322:0.000000000000277:414:107:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698125::NZ_RZUG01000006.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55692-59256Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_05130RefSeq proteinWP_150335461.1
Context group ID
GCF_008698125::NZ_RZUG01000006.1::G00021Context members
EMO92_RS05125EMO92_RS05130
Partner locus tags
EMO92_RS05125EMO92_RS05130
Partner old locus tags
EMO92_05125EMO92_05130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150335461.1Primary protein accession used for annex mappings.
UniProt accessionA0A5J5E985Primary UniProt accession resolved in the annex database.
UniProt IDA0A5J5E985_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS05130Primary locus identifier stored in the genes table.
Old locus tagEMO92_05130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000006.1Sequence record reported by the local genomic context database.
Genomic interval56 623-59 256 nt2 634 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 692-59 256 ntGCF_008698125::NZ_RZUG01000006.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000006.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span55 692-59 256 nt3 565 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 692 nt59 256 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO92_RS05125GCF_008698125#EMO92_RS05125
RRNarL
55 692-56 450 nt · Reverse (-)
EMO92_RS05130GCF_008698125#EMO92_RS05130
HKClassicCurrent focus
56 623-59 256 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698125#EMO92_RS05130The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0522679
Simplified PFAM architecture for HKOC_0522679
PFAM domain coverage: 384 / 827 aa (46.4%)
1 aa827 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[20-107] | HisKA_3[215-277] | HATPase_c[322-413] | DUF7134[502-642]
- Domain count: 4
- Matched identifier: HKOC_0522679
- Positioned domains: DUF7134 20-107 ; HisKA_3 215-277 ; HATPase_c 322-413 ; DUF7134 502-642
Cluster members and taxonomy
Representative gene: GCF_008698125#EMO92_RS05130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key