1 Response_reg#1
9-127 aa · 119 aa · 47.2% of protein
Raw token
Response_reg:9:3.49e-29:127:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS05125
Response regulator NarL family
Bifidobacterium reuteri · GCF_008698125
ClassRRTypeNarLLength252 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698125#EMO92_RS05125Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 252 aa (70.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
189-246 aa · 58 aa · 23.0% of protein
Raw token
HTH_LUXR:189:1.19e-24:246:58:58- Raw architecture: Response_reg:9:3.49e-29:127:119:111#HTH_LUXR:189:1.19e-24:246:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698125::NZ_RZUG01000006.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55692-59256Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_05125RefSeq proteinWP_150335460.1
Context group ID
GCF_008698125::NZ_RZUG01000006.1::G00021Context members
EMO92_RS05125EMO92_RS05130
Partner locus tags
EMO92_RS05125EMO92_RS05130
Partner old locus tags
EMO92_05125EMO92_05130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150335460.1Primary protein accession used for annex mappings.
UniProt accessionA0A5J5E858Primary UniProt accession resolved in the annex database.
UniProt IDA0A5J5E858_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS05125Primary locus identifier stored in the genes table.
Old locus tagEMO92_05125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000006.1Sequence record reported by the local genomic context database.
Genomic interval55 692-56 450 nt759 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 692-59 256 ntGCF_008698125::NZ_RZUG01000006.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000006.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span55 692-59 256 nt3 565 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 692 nt59 256 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO92_RS05125GCF_008698125#EMO92_RS05125
RRNarLCurrent focus
55 692-56 450 nt · Reverse (-)
EMO92_RS05130GCF_008698125#EMO92_RS05130
HKClassic
56 623-59 256 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698125#EMO92_RS05125The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0706191
Simplified PFAM architecture for RROC_0706191
PFAM domain coverage: 173 / 252 aa (68.7%)
1 aa252 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-126] | GerE[192-246]
- Domain count: 2
- Matched identifier: RROC_0706191
- Positioned domains: Response_reg 9-126 ; Response_reg 9-126 ; GerE 192-246 ; GerE 192-246
Cluster members and taxonomy
Representative gene: GCF_008698125#EMO92_RS05125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key