1 Response_reg#1
4-109 aa · 106 aa · 44.5% of protein
Raw token
Response_reg:4:5.18e-17:109:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS04810
Response regulator LytTR family
Bifidobacterium reuteri · GCF_008698125
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008698125#EMO92_RS04810Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 238 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-227 aa · 83 aa · 34.9% of protein
Raw token
LytTR:145:0.0000000000000159:227:89:98- Raw architecture: Response_reg:4:5.18e-17:109:109:111#LytTR:145:0.0000000000000159:227:89:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008698125::NZ_RZUG01000005.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span98368-99084Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_04810RefSeq proteinWP_150335423.1
Context group ID
GCF_008698125::NZ_RZUG01000005.1::G00019Context members
EMO92_RS04810
Partner locus tags
EMO92_RS04810
Partner old locus tags
EMO92_04810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150335423.1Primary protein accession used for annex mappings.
UniProt accessionA0A5J5E968Primary UniProt accession resolved in the annex database.
UniProt IDA0A5J5E968_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS04810Primary locus identifier stored in the genes table.
Old locus tagEMO92_04810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000005.1Sequence record reported by the local genomic context database.
Genomic interval98 368-99 084 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 368-99 084 ntGCF_008698125::NZ_RZUG01000005.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000005.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span98 368-99 084 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 368 nt99 084 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EMO92_RS04810GCF_008698125#EMO92_RS04810
RRLytTRCurrent focus
98 368-99 084 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698125#EMO92_RS04810The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0942844
Simplified PFAM architecture for RROC_0942844
PFAM domain coverage: 193 / 238 aa (81.1%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[140-227]
- Domain count: 2
- Matched identifier: RROC_0942844
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 140-227 ; LytTR 140-227
Cluster members and taxonomy
Representative gene: GCF_008698125#EMO92_RS04810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key