1 KdpD#1
4-213 aa · 210 aa · 21.7% of protein
Raw token
KdpD:4:1.26e-125:213:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS03380
Histidine kinase, Classic
Bifidobacterium reuteri · GCF_008698125
ClassHKTypeClassicLength968 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698125#EMO92_RS03380Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length968 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage388 / 968 aa (40.1%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa968 aa
Domain-by-domain annotation3 items
2 HisKA#2
622-689 aa · 68 aa · 7.0% of protein
Raw token
HisKA:622:0.0000000000265:689:68:643 HATPase_c#3
731-840 aa · 110 aa · 11.4% of protein
Raw token
HATPase_c:731:2.81e-24:840:110:109- Raw architecture: KdpD:4:1.26e-125:213:210:210#HisKA:622:0.0000000000265:689:68:64#HATPase_c:731:2.81e-24:840:110:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698125::NZ_RZUG01000003.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202272-205894Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_03380RefSeq proteinWP_150335266.1
Context group ID
GCF_008698125::NZ_RZUG01000003.1::G00017Context members
EMO92_RS03375EMO92_RS03380
Partner locus tags
EMO92_RS03375EMO92_RS03380
Partner old locus tags
EMO92_03375EMO92_03380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150335266.1Primary protein accession used for annex mappings.
UniProt accessionA0A5J5EA14Primary UniProt accession resolved in the annex database.
UniProt IDA0A5J5EA14_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS03380Primary locus identifier stored in the genes table.
Old locus tagEMO92_03380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000003.1Sequence record reported by the local genomic context database.
Genomic interval202 988-205 894 nt2 907 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span202 272-205 894 ntGCF_008698125::NZ_RZUG01000003.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000003.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span202 272-205 894 nt3 623 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 272 nt205 894 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO92_RS03375GCF_008698125#EMO92_RS03375
RROmpR
202 272-202 985 nt · Reverse (-)
EMO92_RS03380GCF_008698125#EMO92_RS03380
HKClassicCurrent focus
202 988-205 894 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698125#EMO92_RS03380The current gene is the representative for this cluster.
PFAM architectureKdpD + Usp + DUF4118 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0313366
Simplified PFAM architecture for HKOC_0313366
PFAM domain coverage: 605 / 968 aa (62.5%)
1 aa968 aa
KdpDUspDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + Usp + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[5-213] | Usp[234-349] | DUF4118[386-490] | HisKA[623-689] | HATPase_c[732-839]
- Domain count: 5
- Matched identifier: HKOC_0313366
- Positioned domains: KdpD 5-213 ; Usp 234-349 ; DUF4118 386-490 ; HisKA 623-689 ; HATPase_c 732-839
Cluster members and taxonomy
Representative gene: GCF_008698125#EMO92_RS03380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key