1 HAMP#1
168-238 aa · 71 aa · 13.4% of protein
Raw token
HAMP:168:0.000000177:238:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS03330
Histidine kinase, Classic
Bifidobacterium reuteri · GCF_008698125
ClassHKTypeClassicLength528 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698125#EMO92_RS03330Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length528 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage266 / 528 aa (50.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa528 aa
Domain-by-domain annotation3 items
2 HisKA#2
242-308 aa · 67 aa · 12.7% of protein
Raw token
HisKA:242:0.000000000106:308:67:643 HATPase_c#3
392-519 aa · 128 aa · 24.2% of protein
Raw token
HATPase_c:392:0.0000000208:519:128:109- Raw architecture: HAMP:168:0.000000177:238:71:69#HisKA:242:0.000000000106:308:67:64#HATPase_c:392:0.0000000208:519:128:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698125::NZ_RZUG01000003.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191414-193668Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_03330RefSeq proteinWP_052381999.1
Context group ID
GCF_008698125::NZ_RZUG01000003.1::G00016Context members
EMO92_RS03325EMO92_RS03330
Partner locus tags
EMO92_RS03325EMO92_RS03330
Partner old locus tags
EMO92_03325EMO92_03330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052381999.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CUU1Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CUU1_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS03330Primary locus identifier stored in the genes table.
Old locus tagEMO92_03330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000003.1Sequence record reported by the local genomic context database.
Genomic interval192 082-193 668 nt1 587 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span191 414-193 668 ntGCF_008698125::NZ_RZUG01000003.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000003.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span191 414-193 668 nt2 255 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 414 nt193 668 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO92_RS03325GCF_008698125#EMO92_RS03325
RROmpR
191 414-192 085 nt · Forward (+)
EMO92_RS03330GCF_008698125#EMO92_RS03330
HKClassicCurrent focus
192 082-193 668 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS03035Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1363654
Simplified PFAM architecture for HKOC_1363654
PFAM domain coverage: 192 / 528 aa (36.4%)
1 aa528 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[243-308] | HATPase_c[393-518]
- Domain count: 2
- Matched identifier: HKOC_1363654
- Positioned domains: HisKA 243-308 ; HATPase_c 393-518
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS03035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key