1 HAMP#1
56-126 aa · 71 aa · 19.7% of protein
Raw token
HAMP:56:1.32e-19:126:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS02250
Histidine kinase, Classic
Bifidobacterium reuteri · GCF_008698125
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698125#EMO92_RS02250Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 360 aa (68.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-194 aa · 65 aa · 18.1% of protein
Raw token
HisKA:130:0.00000000000000475:194:65:643 HATPase_c#3
239-349 aa · 111 aa · 30.8% of protein
Raw token
HATPase_c:239:5.56e-24:349:112:109- Raw architecture: HAMP:56:1.32e-19:126:71:69#HisKA:130:0.00000000000000475:194:65:64#HATPase_c:239:5.56e-24:349:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698125::NZ_RZUG01000002.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span209822-211626Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_02250RefSeq proteinWP_044088536.1
Context group ID
GCF_008698125::NZ_RZUG01000002.1::G00014Context members
EMO92_RS02250EMO92_RS02255
Partner locus tags
EMO92_RS02250EMO92_RS02255
Partner old locus tags
EMO92_02250EMO92_02255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044088536.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CRJ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CRJ7_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS02250Primary locus identifier stored in the genes table.
Old locus tagEMO92_02250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000002.1Sequence record reported by the local genomic context database.
Genomic interval209 822-210 904 nt1 083 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span209 822-211 626 ntGCF_008698125::NZ_RZUG01000002.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000002.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000002.1All displayed genes belong to this local TCS context.
Neighborhood span209 822-211 626 nt1 805 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 822 nt211 626 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO92_RS02250GCF_008698125#EMO92_RS02250
HKClassicCurrent focus
209 822-210 904 nt · Reverse (-)
EMO92_RS02255GCF_008698125#EMO92_RS02255
RROmpR
210 904-211 626 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS07610Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2747412
Simplified PFAM architecture for HKOC_2747412
PFAM domain coverage: 230 / 360 aa (63.9%)
1 aa360 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[72-125] | HisKA[131-194] | HATPase_c[239-350]
- Domain count: 3
- Matched identifier: HKOC_2747412
- Positioned domains: HAMP 72-125 ; HisKA 131-194 ; HATPase_c 239-350
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS07610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key