1 HAMP#1
269-337 aa · 69 aa · 10.5% of protein
Raw token
HAMP:269:0.00000000000000263:337:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO92_RS01540
Histidine kinase, Classic
Bifidobacterium reuteri · GCF_008698125
ClassHKTypeClassicLength657 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698125#EMO92_RS01540Stable P2CS identifier used across views.
GenomeGCF_008698125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length657 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 657 aa (43.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa657 aa
Domain-by-domain annotation3 items
2 HisKA#2
349-418 aa · 70 aa · 10.7% of protein
Raw token
HisKA:349:7.26e-18:418:70:643 HATPase_c#3
482-629 aa · 148 aa · 22.5% of protein
Raw token
HATPase_c:482:3.96e-21:629:148:109- Raw architecture: HAMP:269:0.00000000000000263:337:69:69#HisKA:349:7.26e-18:418:70:64#HATPase_c:482:3.96e-21:629:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698125::NZ_RZUG01000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29741-32532Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO92_01540RefSeq proteinWP_190973761.1
Context group ID
GCF_008698125::NZ_RZUG01000002.1::G00011Context members
EMO92_RS01535EMO92_RS01540
Partner locus tags
EMO92_RS01535EMO92_RS01540
Partner old locus tags
EMO92_01535EMO92_01540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_190973761.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO92_RS01540Primary locus identifier stored in the genes table.
Old locus tagEMO92_01540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUG01000002.1Sequence record reported by the local genomic context database.
Genomic interval30 559-32 532 nt1 974 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 741-32 532 ntGCF_008698125::NZ_RZUG01000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698125::NZ_RZUG01000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUG01000002.1All displayed genes belong to this local TCS context.
Neighborhood span29 741-32 532 nt2 792 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 741 nt32 532 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO92_RS01535GCF_008698125#EMO92_RS01535
RROmpR
29 741-30 472 nt · Forward (+)
EMO92_RS01540GCF_008698125#EMO92_RS01540
HKClassicCurrent focus
30 559-32 532 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698125#EMO92_RS01540The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0879440
Simplified PFAM architecture for HKOC_0879440
PFAM domain coverage: 268 / 657 aa (40.8%)
1 aa657 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[286-337] | HisKA[350-418] | HATPase_c[482-628]
- Domain count: 3
- Matched identifier: HKOC_0879440
- Positioned domains: HAMP 286-337 ; HisKA 350-418 ; HATPase_c 482-628
Cluster members and taxonomy
Representative gene: GCF_008698125#EMO92_RS01540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 983 706 · GCF_008698125
AssemblyASM869812v1 · Scaffoldhaploid
Genome composition2 833 112 bp · 60,5% GCBifidobacterium reuteri
Signal transduction countsGenes 42 · HK 16 · RR 22CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key