1 Response_reg#1
8-108 aa · 101 aa · 42.4% of protein
Raw token
Response_reg:8:3.06e-20:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QU923_RS04530
Response regulator LytTR family
Bifidobacterium sp. · GCF_008669245
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008669245#QU923_RS04530Stable P2CS identifier used across views.
GenomeGCF_008669245Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 238 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:1.99e-20:230:97:98- Raw architecture: Response_reg:8:3.06e-20:108:106:111#LytTR:139:1.99e-20:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008669245::NZ_RQAA01000009.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span36690-37406Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_008669245::NZ_RQAA01000009.1::G00009Context members
QU923_RS04530
Partner locus tags
QU923_RS04530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_042990287.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQU923_RS04530Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_RQAA01000009.1Sequence record reported by the local genomic context database.
Genomic interval36 690-37 406 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 690-37 406 ntGCF_008669245::NZ_RQAA01000009.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008669245::NZ_RQAA01000009.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RQAA01000009.1All displayed genes belong to this local TCS context.
Neighborhood span36 690-37 406 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 690 nt37 406 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QU923_RS04530GCF_008669245#QU923_RS04530
RRLytTRCurrent focus
36 690-37 406 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457765#DWZ00_RS08830Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0940396
Simplified PFAM architecture for RROC_0940396
PFAM domain coverage: 192 / 238 aa (80.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-109] | LytTR[142-230]
- Domain count: 2
- Matched identifier: RROC_0940396
- Positioned domains: Response_reg 7-109 ; Response_reg 7-109 ; LytTR 142-230 ; LytTR 142-230
Cluster members and taxonomy
Representative gene: GCF_003457765#DWZ00_RS08830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_008669245
AssemblyASM866924v1 · Contighaploid
Genome composition2 007 600 bp · 59,5% GCBifidobacterium sp.
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key