1 Response_reg#1
12-97 aa · 86 aa · 81.9% of protein
Raw token
Response_reg:12:0.00000000000000406:97:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QU935_RS00640
Response regulator, CheY family
Bifidobacterium sp. · GCF_008662405
ClassRRTypeCheYLength105 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008662405#QU935_RS00640Stable P2CS identifier used across views.
GenomeGCF_008662405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length105 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage86 / 105 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:12:0.00000000000000406:97:86:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008662405::NZ_RPYW01000015.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-316Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_008662405::NZ_RPYW01000015.1::G00008Context members
QU935_RS00640
Partner locus tags
QU935_RS00640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287067030.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQU935_RS00640Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_RPYW01000015.1Sequence record reported by the local genomic context database.
Genomic interval1-316 nt316 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-316 ntGCF_008662405::NZ_RPYW01000015.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008662405::NZ_RPYW01000015.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RPYW01000015.1All displayed genes belong to this local TCS context.
Neighborhood span1-316 nt316 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt316 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QU935_RS00640GCF_008662405#QU935_RS00640
RRCheYCurrent focus
1-316 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029340115#PIG56_RS07915Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2051238
Simplified PFAM architecture for RROC_2051238
PFAM domain coverage: 145 / 209 aa (69.4%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-101] | GerE[148-202]
- Domain count: 2
- Matched identifier: RROC_2051238
- Positioned domains: Response_reg 12-101 ; GerE 148-202
Cluster members and taxonomy
Representative gene: GCF_029340115#PIG56_RS07915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_008662405
AssemblyASM866240v1 · Contighaploid
Genome composition2 275 812 bp · 60,0% GCBifidobacterium sp.
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key