1 Response_reg#1
11-120 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:11:7.97e-30:120:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F6C11_RS13225
Response regulator OmpR family
Clostridioides difficile · GCF_008579085
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008579085#F6C11_RS13225Stable P2CS identifier used across views.
GenomeGCF_008579085Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-234 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:158:1.43e-29:234:77:77- Raw architecture: Response_reg:11:7.97e-30:120:111:111#Trans_reg_C:158:1.43e-29:234:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008579085::NZ_BEHB01000015.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span111610-113774Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTNHP173_25920RefSeq proteinWP_003423570.1
Context group ID
GCF_008579085::NZ_BEHB01000015.1::G00043Context members
F6C11_RS13225F6C11_RS13230
Partner locus tags
F6C11_RS13225F6C11_RS13230
Partner old locus tags
TNHP173_25920TNHP173_25930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003423570.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF6C11_RS13225Primary locus identifier stored in the genes table.
Old locus tagTNHP173_25920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BEHB01000015.1Sequence record reported by the local genomic context database.
Genomic interval111 610-112 323 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span111 610-113 774 ntGCF_008579085::NZ_BEHB01000015.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008579085::NZ_BEHB01000015.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BEHB01000015.1All displayed genes belong to this local TCS context.
Neighborhood span111 610-113 774 nt2 165 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 610 nt113 774 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F6C11_RS13225GCF_008579085#F6C11_RS13225
RROmpRCurrent focus
111 610-112 323 nt · Forward (+)
F6C11_RS13230GCF_008579085#F6C11_RS13230
HKClassic
112 368-113 774 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0203385Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961605
Simplified PFAM architecture for RROC_0961605
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-119] | Trans_reg_C[158-234]
- Domain count: 2
- Matched identifier: RROC_0961605
- Positioned domains: Response_reg 11-119 ; Response_reg 11-119 ; Trans_reg_C 158-234 ; Trans_reg_C 158-234
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0203385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_008579085
AssemblyASM857908v1 · Contighaploid
Genome composition3 975 570 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key