1 Response_reg#1
6-116 aa · 111 aa · 51.6% of protein
Raw token
Response_reg:6:1.96e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN393_RS02475
Response regulator NarL family
Bacillus sp. BPN334 · GCF_008368885
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008368885#DN393_RS02475Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 215 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 25.6% of protein
Raw token
HTH_LUXR:151:2.94e-24:205:55:58- Raw architecture: Response_reg:6:1.96e-37:116:111:111#HTH_LUXR:151:2.94e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008368885::NZ_QOZW01000003.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154241-156000Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN393_02495RefSeq proteinWP_064477349.1
Context group ID
GCF_008368885::NZ_QOZW01000003.1::G00048Context members
DN393_RS02470DN393_RS02475
Partner locus tags
DN393_RS02470DN393_RS02475
Partner old locus tags
DN393_02490DN393_02495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064477349.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PLP2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PLP2_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN393_RS02475Primary locus identifier stored in the genes table.
Old locus tagDN393_02495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QOZW01000003.1Sequence record reported by the local genomic context database.
Genomic interval155 353-156 000 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 241-156 000 ntGCF_008368885::NZ_QOZW01000003.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008368885::NZ_QOZW01000003.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QOZW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span154 241-156 000 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 241 nt156 000 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DN393_RS02470GCF_008368885#DN393_RS02470
HKClassic
154 241-155 338 nt · Forward (+)
DN393_RS02475GCF_008368885#DN393_RS02475
RRNarLCurrent focus
155 353-156 000 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS27645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1910528
Simplified PFAM architecture for RROC_1910528
PFAM domain coverage: 167 / 215 aa (77.7%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_1910528
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS27645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 815 · GCF_008368885
AssemblyASM836888v1 · Contighaploid
Genome composition5 993 266 bp · 35,0% GCBacillus sp. BPN334
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key