1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:1.14e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN409_RS09900
Response regulator OmpR family
Bacillus mycoides · GCF_008274925
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008274925#DN409_RS09900Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:148:8.33e-32:224:77:77- Raw architecture: Response_reg:4:1.14e-36:114:111:111#Trans_reg_C:148:8.33e-32:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008274925::NZ_CP031071.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1930893-1932940Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN409_09890RefSeq proteinWP_002189311.1
Context group ID
GCF_008274925::NZ_CP031071.1::G00028Context members
DN409_RS09900DN409_RS09905
Partner locus tags
DN409_RS09900DN409_RS09905
Partner old locus tags
DN409_09890DN409_09895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002189311.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN409_RS09900Primary locus identifier stored in the genes table.
Old locus tagDN409_09890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP031071.1Sequence record reported by the local genomic context database.
Genomic interval1 930 893-1 931 582 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 930 893-1 932 940 ntGCF_008274925::NZ_CP031071.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008274925::NZ_CP031071.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP031071.1All displayed genes belong to this local TCS context.
Neighborhood span1 930 893-1 932 940 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 930 893 nt1 932 940 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DN409_RS09900GCF_008274925#DN409_RS09900
RROmpRCurrent focus
1 930 893-1 931 582 nt · Forward (+)
DN409_RS09905GCF_008274925#DN409_RS09905
HKClassic
1 931 579-1 932 940 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513155#BW1_RS05405Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1250207
Simplified PFAM architecture for RROC_1250207
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1250207
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000513155#BW1_RS05405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_008274925
AssemblyASM827492v1 · Complete Genomehaploid
Genome composition5 939 450 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 67 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key