1 Response_reg#1
4-96 aa · 93 aa · 36.3% of protein
Raw token
Response_reg:4:7.52e-16:96:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D4M69_RS11300
Response regulator, FrzZ family
Enterococcus faecalis · GCF_008082585
ClassRRTypeFrzZLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008082585#D4M69_RS11300Stable P2CS identifier used across views.
GenomeGCF_008082585Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 256 aa (81.3%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 Response_reg#2
137-251 aa · 115 aa · 44.9% of protein
Raw token
Response_reg:137:0.0000000874:251:115:111- Raw architecture: Response_reg:4:7.52e-16:96:93:111#Response_reg:137:0.0000000874:251:115:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008082585::NZ_QYMW01000013.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span60277-61047Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD4M69_11325RefSeq proteinWP_148406982.1
Context group ID
GCF_008082585::NZ_QYMW01000013.1::G00002Context members
D4M69_RS11300
Partner locus tags
D4M69_RS11300
Partner old locus tags
D4M69_11325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_148406982.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD4M69_RS11300Primary locus identifier stored in the genes table.
Old locus tagD4M69_11325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QYMW01000013.1Sequence record reported by the local genomic context database.
Genomic interval60 277-61 047 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 277-61 047 ntGCF_008082585::NZ_QYMW01000013.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008082585::NZ_QYMW01000013.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QYMW01000013.1All displayed genes belong to this local TCS context.
Neighborhood span60 277-61 047 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 277 nt61 047 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D4M69_RS11300GCF_008082585#D4M69_RS11300
RRFrzZCurrent focus
60 277-61 047 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008082585#D4M69_RS11300The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0675245
Simplified PFAM architecture for RROC_0675245
PFAM domain coverage: 100 / 256 aa (39.1%)
1 aa256 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-103]
- Domain count: 1
- Matched identifier: RROC_0675245
- Positioned domains: Response_reg 4-103 ; Response_reg 4-103
Cluster members and taxonomy
Representative gene: GCF_008082585#D4M69_RS11300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_008082585
AssemblyASM808258v1 · Contighaploid
Genome composition3 078 916 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key