1 Response_reg#1
4-113 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:4:5.28e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D4M69_RS11285
Response regulator OmpR family
Enterococcus faecalis · GCF_008082585
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008082585#D4M69_RS11285Stable P2CS identifier used across views.
GenomeGCF_008082585Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 230 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-226 aa · 73 aa · 31.7% of protein
Raw token
Trans_reg_C:154:2.13e-32:226:73:77- Raw architecture: Response_reg:4:5.28e-39:113:111:111#Trans_reg_C:154:2.13e-32:226:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008082585::NZ_QYMW01000013.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span57840-59455Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD4M69_11310RefSeq proteinWP_148406980.1
Context group ID
GCF_008082585::NZ_QYMW01000013.1::G00001Context members
D4M69_RS11280D4M69_RS11285
Partner locus tags
D4M69_RS11280D4M69_RS11285
Partner old locus tags
D4M69_11305D4M69_11310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_148406980.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD4M69_RS11285Primary locus identifier stored in the genes table.
Old locus tagD4M69_11310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QYMW01000013.1Sequence record reported by the local genomic context database.
Genomic interval58 763-59 455 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 840-59 455 ntGCF_008082585::NZ_QYMW01000013.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008082585::NZ_QYMW01000013.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QYMW01000013.1All displayed genes belong to this local TCS context.
Neighborhood span57 840-59 455 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 840 nt59 455 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D4M69_RS11280GCF_008082585#D4M69_RS11280
HKClassic
57 840-58 757 nt · Reverse (-)
D4M69_RS11285GCF_008082585#D4M69_RS11285
RROmpRCurrent focus
58 763-59 455 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008082585#D4M69_RS11285The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1214795
Simplified PFAM architecture for RROC_1214795
PFAM domain coverage: 183 / 230 aa (79.6%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[153-226]
- Domain count: 2
- Matched identifier: RROC_1214795
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 153-226 ; Trans_reg_C 153-226
Cluster members and taxonomy
Representative gene: GCF_008082585#D4M69_RS11285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_008082585
AssemblyASM808258v1 · Contighaploid
Genome composition3 078 916 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key