1 HAMP#1
4-58 aa · 55 aa · 18.0% of protein
Raw token
HAMP:4:0.0000126:58:55:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D4M69_RS11280
Histidine kinase, Classic
Enterococcus faecalis · GCF_008082585
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008082585#D4M69_RS11280Stable P2CS identifier used across views.
GenomeGCF_008082585Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage230 / 305 aa (75.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000524:150:66:643 HATPase_c#3
197-305 aa · 109 aa · 35.7% of protein
Raw token
HATPase_c:197:9.77e-31:305:109:109- Raw architecture: HAMP:4:0.0000126:58:55:69#HisKA:85:0.0000000524:150:66:64#HATPase_c:197:9.77e-31:305:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008082585::NZ_QYMW01000013.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span57840-59455Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD4M69_11305RefSeq proteinWP_148406979.1
Context group ID
GCF_008082585::NZ_QYMW01000013.1::G00001Context members
D4M69_RS11280D4M69_RS11285
Partner locus tags
D4M69_RS11280D4M69_RS11285
Partner old locus tags
D4M69_11305D4M69_11310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_148406979.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD4M69_RS11280Primary locus identifier stored in the genes table.
Old locus tagD4M69_11305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QYMW01000013.1Sequence record reported by the local genomic context database.
Genomic interval57 840-58 757 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 840-59 455 ntGCF_008082585::NZ_QYMW01000013.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008082585::NZ_QYMW01000013.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QYMW01000013.1All displayed genes belong to this local TCS context.
Neighborhood span57 840-59 455 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 840 nt59 455 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D4M69_RS11280GCF_008082585#D4M69_RS11280
HKClassicCurrent focus
57 840-58 757 nt · Reverse (-)
D4M69_RS11285GCF_008082585#D4M69_RS11285
RROmpR
58 763-59 455 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008082585#D4M69_RS11280The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882427
Simplified PFAM architecture for HKOC_2882427
PFAM domain coverage: 172 / 305 aa (56.4%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[197-304]
- Domain count: 2
- Matched identifier: HKOC_2882427
- Positioned domains: HisKA 85-148 ; HATPase_c 197-304
Cluster members and taxonomy
Representative gene: GCF_008082585#D4M69_RS11280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_008082585
AssemblyASM808258v1 · Contighaploid
Genome composition3 078 916 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key