1 Response_reg#1
3-112 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:3:1.1e-25:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FS640_RS28325
Response regulator OmpR family
Bacillus nitratireducens · GCF_007676595
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007676595#FS640_RS28325Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:148:2e-26:221:75:77- Raw architecture: Response_reg:3:1.1e-25:112:111:111#Trans_reg_C:148:2e-26:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007676595::NZ_VEKC01000022.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9992-10666Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007676595::NZ_VEKC01000022.1::G00024Context members
FS640_RS28325
Partner locus tags
FS640_RS28325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000699964.1Primary protein accession used for annex mappings.
UniProt accessionA0ABU6PJ01Primary UniProt accession resolved in the annex database.
UniProt IDA0ABU6PJ01_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFS640_RS28325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VEKC01000022.1Sequence record reported by the local genomic context database.
Genomic interval9 992-10 666 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 992-10 666 ntGCF_007676595::NZ_VEKC01000022.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007676595::NZ_VEKC01000022.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VEKC01000022.1All displayed genes belong to this local TCS context.
Neighborhood span9 992-10 666 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 992 nt10 666 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FS640_RS28325GCF_007676595#FS640_RS28325
RROmpRCurrent focus
9 992-10 666 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007676595#FS640_RS28325The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1547390
Simplified PFAM architecture for RROC_1547390
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1547390
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_007676595#FS640_RS28325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_007676595
AssemblyASM767659v1 · Scaffoldhaploid
Genome composition6 040 430 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 132 · HK 72 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key