1 Response_reg#1
4-116 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:4:1.4e-18:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FS640_RS21050
Response regulator, unclassified
Bacillus nitratireducens · GCF_007676595
ClassRRTypeunclassifiedLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007676595#FS640_RS21050Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 225 aa (50.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.4e-18:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007676595::NZ_VEKC01000008.1::G00076
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span196642-197319Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007676595::NZ_VEKC01000008.1::G00076Context members
FS640_RS21050
Partner locus tags
FS640_RS21050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088007402.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFS640_RS21050Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VEKC01000008.1Sequence record reported by the local genomic context database.
Genomic interval196 642-197 319 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span196 642-197 319 ntGCF_007676595::NZ_VEKC01000008.1::G00076
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007676595::NZ_VEKC01000008.1::G00076Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VEKC01000008.1All displayed genes belong to this local TCS context.
Neighborhood span196 642-197 319 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
196 642 nt197 319 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FS640_RS21050GCF_007676595#FS640_RS21050
RRunclassifiedCurrent focus
196 642-197 319 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007676595#FS640_RS21050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1484535
Simplified PFAM architecture for RROC_1484535
PFAM domain coverage: 177 / 225 aa (78.7%)
1 aa225 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[4-115] | HTH_64[158-222]
- Domain count: 2
- Matched identifier: RROC_1484535
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_64 158-222 ; HTH_64 158-222
Cluster members and taxonomy
Representative gene: GCF_007676595#FS640_RS21050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_007676595
AssemblyASM767659v1 · Scaffoldhaploid
Genome composition6 040 430 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 132 · HK 72 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key