1 Response_reg#1
3-108 aa · 106 aa · 44.5% of protein
Raw token
Response_reg:3:0.00000000000271:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FS640_RS12490
Response regulator LytTR family
Bacillus nitratireducens · GCF_007676595
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007676595#FS640_RS12490Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 238 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-237 aa · 102 aa · 42.9% of protein
Raw token
LytTR:136:4.09e-28:237:102:98- Raw architecture: Response_reg:3:0.00000000000271:108:108:111#LytTR:136:4.09e-28:237:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007676595::NZ_VEKC01000003.1::G00052
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span494732-495448Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007676595::NZ_VEKC01000003.1::G00052Context members
FS640_RS12490
Partner locus tags
FS640_RS12490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000698275.1Primary protein accession used for annex mappings.
UniProt accessionA0ABU6PF78Primary UniProt accession resolved in the annex database.
UniProt IDA0ABU6PF78_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFS640_RS12490Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VEKC01000003.1Sequence record reported by the local genomic context database.
Genomic interval494 732-495 448 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span494 732-495 448 ntGCF_007676595::NZ_VEKC01000003.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007676595::NZ_VEKC01000003.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VEKC01000003.1All displayed genes belong to this local TCS context.
Neighborhood span494 732-495 448 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
494 732 nt495 448 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FS640_RS12490GCF_007676595#FS640_RS12490
RRLytTRCurrent focus
494 732-495 448 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007676595#FS640_RS12490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0942459
Simplified PFAM architecture for RROC_0942459
PFAM domain coverage: 204 / 238 aa (85.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[138-236]
- Domain count: 2
- Matched identifier: RROC_0942459
- Positioned domains: Response_reg 5-109 ; Response_reg 5-109 ; LytTR 138-236 ; LytTR 138-236
Cluster members and taxonomy
Representative gene: GCF_007676595#FS640_RS12490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_007676595
AssemblyASM767659v1 · Scaffoldhaploid
Genome composition6 040 430 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 132 · HK 72 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key