1 Response_reg#1
3-112 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:3:5.31e-41:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FS640_RS11540
Response regulator OmpR family
Bacillus nitratireducens · GCF_007676595
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007676595#FS640_RS11540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 222 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.3% of protein
Raw token
Trans_reg_C:147:1.03e-28:220:77:77- Raw architecture: Response_reg:3:5.31e-41:112:111:111#Trans_reg_C:147:1.03e-28:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007676595::NZ_VEKC01000003.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span305923-308033Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007676595::NZ_VEKC01000003.1::G00048Context members
FS640_RS11535FS640_RS11540
Partner locus tags
FS640_RS11535FS640_RS11540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088008428.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFS640_RS11540Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VEKC01000003.1Sequence record reported by the local genomic context database.
Genomic interval307 365-308 033 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span305 923-308 033 ntGCF_007676595::NZ_VEKC01000003.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007676595::NZ_VEKC01000003.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VEKC01000003.1All displayed genes belong to this local TCS context.
Neighborhood span305 923-308 033 nt2 111 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
305 923 nt308 033 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FS640_RS11535GCF_007676595#FS640_RS11535
HKClassic
305 923-307 353 nt · Reverse (-)
FS640_RS11540GCF_007676595#FS640_RS11540
RROmpRCurrent focus
307 365-308 033 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007676595#FS640_RS11540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1649464
Simplified PFAM architecture for RROC_1649464
PFAM domain coverage: 183 / 222 aa (82.4%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1649464
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_007676595#FS640_RS11540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_007676595
AssemblyASM767659v1 · Scaffoldhaploid
Genome composition6 040 430 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 132 · HK 72 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key