1 Response_reg#1
1-106 aa · 106 aa · 91.4% of protein
Raw token
Response_reg:1:2.51e-38:106:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FS506_RS28950
Response regulator, CheY family
Bacillus mycoides · GCF_007673715
ClassRRTypeCheYLength116 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007673715#FS506_RS28950Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length116 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage106 / 116 aa (91.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa116 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:2.51e-38:106:107:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007673715::NZ_VEAE01000050.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-349Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007673715::NZ_VEAE01000050.1::G00058Context members
FS506_RS28950
Partner locus tags
FS506_RS28950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144513882.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFS506_RS28950Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VEAE01000050.1Sequence record reported by the local genomic context database.
Genomic interval1-349 nt349 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-349 ntGCF_007673715::NZ_VEAE01000050.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007673715::NZ_VEAE01000050.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VEAE01000050.1All displayed genes belong to this local TCS context.
Neighborhood span1-349 nt349 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt349 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FS506_RS28950GCF_007673715#FS506_RS28950
RRCheYCurrent focus
1-349 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398985#IG9_RS26695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304328
Simplified PFAM architecture for RROC_1304328
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1304328
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000398985#IG9_RS26695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_007673715
AssemblyASM767371v1 · Scaffoldhaploid
Genome composition5 573 209 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 140 · HK 75 · RR 64CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key