1 HAMP#1
6-49 aa · 44 aa · 15.6% of protein
Raw token
HAMP:6:0.00000324:49:44:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FS506_RS28810
Histidine kinase, Classic
Bacillus mycoides · GCF_007673715
ClassHKTypeClassicLength282 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007673715#FS506_RS28810Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length282 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage202 / 282 aa (71.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa282 aa
Domain-by-domain annotation3 items
2 HisKA#2
61-124 aa · 64 aa · 22.7% of protein
Raw token
HisKA:61:0.000000000000001:124:64:643 HATPase_c#3
174-267 aa · 94 aa · 33.3% of protein
Raw token
HATPase_c:174:1.86e-17:267:94:109- Raw architecture: HAMP:6:0.00000324:49:44:69#HisKA:61:0.000000000000001:124:64:64#HATPase_c:174:1.86e-17:267:94:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007673715::NZ_VEAE01000027.1::G00037
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4926-5775Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007673715::NZ_VEAE01000027.1::G00037Context members
FS506_RS28810
Partner locus tags
FS506_RS28810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144513857.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFS506_RS28810Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VEAE01000027.1Sequence record reported by the local genomic context database.
Genomic interval4 926-5 775 nt850 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 926-5 775 ntGCF_007673715::NZ_VEAE01000027.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007673715::NZ_VEAE01000027.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VEAE01000027.1All displayed genes belong to this local TCS context.
Neighborhood span4 926-5 775 nt850 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 926 nt5 775 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FS506_RS28810GCF_007673715#FS506_RS28810
HKClassicCurrent focus
4 926-5 775 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26330Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2758860
Simplified PFAM architecture for HKOC_2758860
PFAM domain coverage: 203 / 358 aa (56.7%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[82-124] | HisKA[137-200] | HATPase_c[250-345]
- Domain count: 3
- Matched identifier: HKOC_2758860
- Positioned domains: HAMP 82-124 ; HisKA 137-200 ; HATPase_c 250-345
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_007673715
AssemblyASM767371v1 · Scaffoldhaploid
Genome composition5 573 209 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 140 · HK 75 · RR 64CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key