1 Response_reg#1
4-114 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:4:1.45e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FS506_RS27550
Response regulator OmpR family
Bacillus mycoides · GCF_007673715
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007673715#FS506_RS27550Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:147:3.4e-27:220:76:77- Raw architecture: Response_reg:4:1.45e-34:114:111:111#Trans_reg_C:147:3.4e-27:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007673715::NZ_VEAE01000014.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42868-44906Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007673715::NZ_VEAE01000014.1::G00010Context members
FS506_RS27545FS506_RS27550
Partner locus tags
FS506_RS27545FS506_RS27550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098632865.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFS506_RS27550Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VEAE01000014.1Sequence record reported by the local genomic context database.
Genomic interval44 232-44 906 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 868-44 906 ntGCF_007673715::NZ_VEAE01000014.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007673715::NZ_VEAE01000014.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VEAE01000014.1All displayed genes belong to this local TCS context.
Neighborhood span42 868-44 906 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 868 nt44 906 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FS506_RS27545GCF_007673715#FS506_RS27545
HKClassic
42 868-44 235 nt · Reverse (-)
FS506_RS27550GCF_007673715#FS506_RS27550
RROmpRCurrent focus
44 232-44 906 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002568935#COL71_RS21320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1540471
Simplified PFAM architecture for RROC_1540471
PFAM domain coverage: 184 / 224 aa (82.1%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1540471
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_002568935#COL71_RS21320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_007673715
AssemblyASM767371v1 · Scaffoldhaploid
Genome composition5 573 209 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 140 · HK 75 · RR 64CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key