Gene detail

FS506_RS15115

Histidine kinase, Hybrid

Bacillus mycoides · GCF_007673715

Open genome Open selected cluster RefSeq

ClassHKTypeHybridLength597 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_007673715#FS506_RS15115Stable P2CS identifier used across views.

GenomeGCF_007673715Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus

Selected clusterHKOC_1069568Run 6 · 6 sequences · id 100% · cov 80%

External referencesWP_098632636.1 · MIST4 FS506_RS15115RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKA_3HATPase_cResponse_regHTH_LUXR

Protein length597 aaLength used to scale native and Biotite-like views.

Annotated domains44 with usable coordinates.

Domain coverage319 / 597 aa (53.4%)Merged over positioned domains only.

Domain description1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa597 aa

Domain-by-domain annotation4 items

1 HisKA_3#1

183-247 aa · 65 aa · 10.9% of protein

Raw tokenHisKA_3:183:0.000000000000335:247:68:68

2 HATPase_c#2

289-374 aa · 86 aa · 14.4% of protein

Raw tokenHATPase_c:289:7.06e-17:374:104:109

3 Response_reg#3

384-495 aa · 112 aa · 18.8% of protein

Raw tokenResponse_reg:384:1.85e-29:495:112:111

4 HTH_LUXR#4

536-591 aa · 56 aa · 9.4% of protein

Raw tokenHTH_LUXR:536:7.34e-16:591:56:58

Raw architecture: HisKA_3:183:0.000000000000335:247:68:68#HATPase_c:289:7.06e-17:374:104:109#Response_reg:384:1.85e-29:495:112:111#HTH_LUXR:536:7.34e-16:591:56:58
Domain description: 1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXR
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_007673715::NZ_VEAE01000004.1::G00050

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span545-2338Genomic interval covered by the local TCS group.

Identifiers

RefSeq proteinWP_098632636.1

Context group IDGCF_007673715::NZ_VEAE01000004.1::G00050

Context members

FS506_RS15115

Partner locus tags

FS506_RS15115

Partner protein IDs

WP_098632636.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_098632636.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagFS506_RS15115Primary locus identifier stored in the genes table.

Old locus tagUnavailableNo previous locus tag available for this gene.

Contig / repliconNZ_VEAE01000004.1Sequence record reported by the local genomic context database.

Genomic interval545-2 338 nt1 794 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span545-2 338 ntGCF_007673715::NZ_VEAE01000004.1::G00050

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_007673715::NZ_VEAE01000004.1::G00050

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_VEAE01000004.1All displayed genes belong to this local TCS context.

Neighborhood span545-2 338 nt1 794 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

545 nt2 338 nt

+-FS506_RS15115

Neighborhood gene cards

1 gene in the current local neighborhood.

FS506_RS15115GCF_007673715#FS506_RS15115

HKHybridCurrent focus

545-2 338 nt · Reverse (-)

RefSeq WP_098632636.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1069568HK

Run 66 sequencesid 100%cov 80%

PFAM HisKA_3 + HATPase_c + Response_reg + GerE

Representative GCF_002568935#COL71_RS12870

Selected clusterHKOC_1069568Run 6 · HK · 6 sequences

Representative sequenceGCF_002568935#COL71_RS12870Use this link to inspect the representative gene detail.

PFAM architectureHisKA_3 + HATPase_c + Response_reg + GerE4 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_1069568

Simplified PFAM architecture for HKOC_1069568

PFAM domain coverage: 313 / 597 aa (52.4%)

1 aa597 aa

HisKA_3HATPase_cResponse_regGerE

Simplified architecture: HisKA_3 + HATPase_c + Response_reg + GerE
Raw architecture: HisKA_3[183-245] | HATPase_c[289-373] | Response_reg[384-494] | GerE[537-590]
Domain count: 4
Matched identifier: HKOC_1069568
Positioned domains: HisKA_3 183-245 ; HATPase_c 289-373 ; Response_reg 384-494 ; GerE 537-590

Cluster members and taxonomy

Representative gene: GCF_002568935#COL71_RS12870

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 405 · GCF_007673715

AssemblyASM767371v1 · Scaffoldhaploid

Genome composition5 573 209 bp · 35,0% GCBacillus mycoides

Signal transduction countsGenes 140 · HK 75 · RR 64CheA 1 · PP 1

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key