1 HAMP#1
104-164 aa · 61 aa · 15.6% of protein
Raw token
HAMP:104:0.00000000154:164:61:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FLH82_RS09335
Histidine kinase, Classic
Clostridioides difficile · GCF_007114935
ClassHKTypeClassicLength391 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007114935#FLH82_RS09335Stable P2CS identifier used across views.
GenomeGCF_007114935Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length391 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 391 aa (58.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa391 aa
Domain-by-domain annotation3 items
2 HisKA#2
177-240 aa · 64 aa · 16.4% of protein
Raw token
HisKA:177:0.000000000947:240:64:643 HATPase_c#3
286-388 aa · 103 aa · 26.3% of protein
Raw token
HATPase_c:286:2.83e-21:388:105:109- Raw architecture: HAMP:104:0.00000000154:164:61:69#HisKA:177:0.000000000947:240:64:64#HATPase_c:286:2.83e-21:388:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007114935::NZ_VIND01000004.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span266746-268583Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007114935::NZ_VIND01000004.1::G00049Context members
FLH82_RS09335FLH82_RS09340
Partner locus tags
FLH82_RS09335FLH82_RS09340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236875636.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFLH82_RS09335Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VIND01000004.1Sequence record reported by the local genomic context database.
Genomic interval266 746-267 921 nt1 176 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span266 746-268 583 ntGCF_007114935::NZ_VIND01000004.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007114935::NZ_VIND01000004.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VIND01000004.1All displayed genes belong to this local TCS context.
Neighborhood span266 746-268 583 nt1 838 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
266 746 nt268 583 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FLH82_RS09335GCF_007114935#FLH82_RS09335
HKClassicCurrent focus
266 746-267 921 nt · Reverse (-)
FLH82_RS09340GCF_007114935#FLH82_RS09340
RROmpR
267 909-268 583 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007114605#FLH51_RS08605Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2521200
Simplified PFAM architecture for HKOC_2521200
PFAM domain coverage: 213 / 391 aa (54.5%)
1 aa391 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[116-164] | HisKA[178-239] | HATPase_c[286-387]
- Domain count: 3
- Matched identifier: HKOC_2521200
- Positioned domains: HAMP 116-164 ; HisKA 178-239 ; HATPase_c 286-387
Cluster members and taxonomy
Representative gene: GCF_007114605#FLH51_RS08605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007114935
AssemblyASM711493v1 · Contighaploid
Genome composition4 309 409 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 51 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key