1 Response_reg#1
3-86 aa · 84 aa · 36.5% of protein
Raw token
Response_reg:3:0.000000126:86:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FLH88_RS13385
Response regulator LytTR family
Clostridioides difficile · GCF_007114885
ClassRRTypeLytTRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007114885#FLH88_RS13385Stable P2CS identifier used across views.
GenomeGCF_007114885Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 230 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 LytTR#2
133-220 aa · 88 aa · 38.3% of protein
Raw token
LytTR:133:0.00000000000933:220:93:98- Raw architecture: Response_reg:3:0.000000126:86:87:111#LytTR:133:0.00000000000933:220:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007114885::NZ_VINB01000008.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44624-45316Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007114885::NZ_VINB01000008.1::G00058Context members
FLH88_RS13385
Partner locus tags
FLH88_RS13385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144016367.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFLH88_RS13385Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VINB01000008.1Sequence record reported by the local genomic context database.
Genomic interval44 624-45 316 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 624-45 316 ntGCF_007114885::NZ_VINB01000008.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007114885::NZ_VINB01000008.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VINB01000008.1All displayed genes belong to this local TCS context.
Neighborhood span44 624-45 316 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 624 nt45 316 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FLH88_RS13385GCF_007114885#FLH88_RS13385
RRLytTRCurrent focus
44 624-45 316 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007114605#FLH51_RS12630Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1214395
Simplified PFAM architecture for RROC_1214395
PFAM domain coverage: 89 / 230 aa (38.7%)
1 aa230 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[134-222]
- Domain count: 1
- Matched identifier: RROC_1214395
- Positioned domains: LytTR 134-222 ; LytTR 134-222
Cluster members and taxonomy
Representative gene: GCF_007114605#FLH51_RS12630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007114885
AssemblyASM711488v1 · Scaffoldhaploid
Genome composition4 315 640 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 51 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key