1 Response_reg#1
5-113 aa · 109 aa · 49.1% of protein
Raw token
Response_reg:5:1.43e-23:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FLH41_RS07320
Response regulator OmpR family
Clostridioides difficile · GCF_007114785
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007114785#FLH41_RS07320Stable P2CS identifier used across views.
GenomeGCF_007114785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 222 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-217 aa · 71 aa · 32.0% of protein
Raw token
Trans_reg_C:147:2.18e-30:217:76:77- Raw architecture: Response_reg:5:1.43e-23:113:110:111#Trans_reg_C:147:2.18e-30:217:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007114785::NZ_VIMW01000004.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87190-88976Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007114785::NZ_VIMW01000004.1::G00045Context members
FLH41_RS07320FLH41_RS07325
Partner locus tags
FLH41_RS07320FLH41_RS07325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077712409.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFLH41_RS07320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VIMW01000004.1Sequence record reported by the local genomic context database.
Genomic interval87 190-87 858 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span87 190-88 976 ntGCF_007114785::NZ_VIMW01000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007114785::NZ_VIMW01000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VIMW01000004.1All displayed genes belong to this local TCS context.
Neighborhood span87 190-88 976 nt1 787 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 190 nt88 976 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FLH41_RS07320GCF_007114785#FLH41_RS07320
RROmpRCurrent focus
87 190-87 858 nt · Forward (+)
FLH41_RS07325GCF_007114785#FLH41_RS07325
HKClassic
87 966-88 976 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004315945#E0P54_RS06700Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1648209
Simplified PFAM architecture for RROC_1648209
PFAM domain coverage: 178 / 222 aa (80.2%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[148-217]
- Domain count: 2
- Matched identifier: RROC_1648209
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 148-217 ; Trans_reg_C 148-217
Cluster members and taxonomy
Representative gene: GCF_004315945#E0P54_RS06700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007114785
AssemblyASM711478v1 · Scaffoldhaploid
Genome composition4 218 668 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 52 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key